Telopea speciosissima (New South Wales waratah): 122654782
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Entry
122654782 CDS
T07910
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1
KO
K28108
shortage in chiasmata 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tss03036
]
122654782
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122654782
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
SHOC1_ATPase
ZIP2_M
SHOC1_HhH_tandem
IL3
Motif
Other DBs
NCBI-GeneID:
122654782
NCBI-ProteinID:
XP_043704967
LinkDB
All DBs
Position
1:76794651..76811034
Genome browser
AA seq
1740 aa
AA seq
DB search
MRTRFRCVDYFKRASIEGLDNLNFFRLPVPLFPPSNICDGEETCCFDSISSVSLEIERLP
VENALSRFFSDVLPHTIDVDNGEIPVTWIQSAYADGPKTHENRRNSTTTATEVQFDEVNS
CLSRNILVLQLFFFWRAEEEEFQISTVHFHCFKVSPRHLLVDILVKIYLQEEFDKCNTDN
SRNLESELRYSKITDIRKRSPKCCSLILDVFYLKLHVAISLAKLSFHQLQEEADYEYDKE
ESLINCRSGTVEIKILKEENEFTGEEEKNRLKVIRLETPELDCFLEEQARFSQKEDRQIF
SQISEIENSLDMVDFKSGTAIHYPCEISKSVYSVDDTHSEFPLEQRSSCFVEDAGFVLDC
CSKFPLLEVNEFGLEFYMSPSIGELHLILENIKDQNWTQNFDLVVDGKDLFGSIDINLLE
CLSGPCPLELCLEPESTCLDLALEMEFFCIQEAADLKGTSPMHLQMSGCDFFSMVSPVQF
QEVEILDLESFQFSEVFANSHLENGAGICDQMLKDNMDSVWNFYESIVNNELALVDDTFK
PLPIPVLSVVEDIQLLSALEEVLAVMEPLPPSASDGIYLDWHLLEGETWNLEEIDTYNTD
AELKYFNSGMVGIDFVFWEEAPDVSSVSESKEIMVEVTGVTLGVNEPLTGAAHSQLSKDS
QKLGIGEVVRETSIDKVTMLFESMSQSNDLDFFLNPKKSTARRSGEPAVTEKTDGEAKLP
LPSSSNPTAICASDEVKPQQWDIEVHQIRLSDHILSLVDNFQKSYLTILENEVALKEQLW
PFPVVDNFNLLSIKKQNLVDWIKNISSRQTTLACGDGTVVALVTLYAIKQMACYLCFHGI
HTAHLYVDNLSRSNKYLRCRLILLQSLIHDAYQKADTEITESHPSLSVIQGILRMKTSQS
GSKVLIVADQLFWLPLKRLLNAMGILFHEVQDVHNHADQPDAWNSNMFTKIIMNSMLHSD
CLLMSHENVSASLPFNKFNIILEYGGSYSSSKIFSFSPKISGLPHLHFLKVELEDFSAPK
ALCEDFYASHFDFAMEDISQSISTLNECIKDHKFEEQLNFEPVNEKCMEYSDTADYVEDC
SKSTSVPSVPFAMESKQINSVTHYPDIVIVVNTQNFDKEMLIYRRSTYQRILAMEKQGVQ
VVEREINLPVDLILSAAVCLVLYDCRNIGKKATVMDEASSCITLYVEHIATNILTSLSFA
FSSCILIFEGESSFLADIMDLSDALYAAATSLGLDLQLFCSYSAELTDDIIMSCIIYATK
LNKGLYPKMFESETLAESFLTSFPSINPLSAHAILTSGGMLVEFLEWSYDRRIQAIGKYH
VPDESLALFSALCRYGEREDSKSGMTECSSSVSPAPDSGNSHCKTECDRKRRKYMTDAHT
FQMPMEELLFDAPHQSTDGILKPSRMCQPYHSHVSSICPEIFEKVKGPNLSPSDQWFDQK
EGLNISVVNDLYWNGNNFENLHGDFKGEVIDLNNSSLPGEDFSIANITNFSPGVKDIRFN
PTPRNSSVLRKSLFGTKDLTCLPASLEINFGSDICSSQKDQNQKLEGNVCAQMDIELDRD
TLPMKCQREFLKGRTAKGSTEDGGGLLFPDKTETPLSNIIHSSQLQRRSPWTMEFLNRIK
EKSKMHQQSLPCDPTISCFGCPGNVQKVAKRSPSVLDGFRYQGGTYPKKIMKQKQQKRLV
QPSSCKNGKASASLLPVWTPTDKRARQTLSFARNGNETQSKLVWADGNVHRLRKKLRNEL
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgcgcactcgtttccgttgcgtcgattacttcaaacgagcttcgatcgaaggccttgat
aacctcaacttttttcgtctaccagtgcctctattcccgccttcgaacatctgcgacgga
gaagaaacttgttgtttcgattcaatttcgagtgtttctctagaaatcgagaggcttccg
gtagagaatgctctttctcgattcttctccgatgttcttcctcataccattgacgttgat
aatggagaaattcctgttacttggattcaaagtgcttatgctgatggaccgaagacccat
gagaaccggagaaattccacaaccacagctactgaggttcaatttgacgaggtaaatagc
tgtttaagtcgaaacatactggtactgcagttatttttcttctggagagcagaagaggag
gaatttcagatctcaactgttcattttcactgcttcaaagtgtctcctcgacacttgtta
gttgatatcctagttaaaatttacttgcaggaggaatttgacaaatgcaatactgacaat
tctagaaacttagaatctgaacttcgatatagtaaaattacagacattagaaaacgatct
cctaagtgttgctctctgattttggatgtgttttacttgaaattgcacgttgcaatttct
cttgccaaattgagctttcatcagttacaggaagaagctgattacgaatacgacaaagaa
gagagtctaataaattgtagatctggaactgtagagatcaaaattctgaaggaggaaaat
gagttcactggtgaagaggaaaagaacaggttaaaagtaatccggcttgagacaccggaa
ctggattgcttcttggaggagcaagcacgcttttctcaaaaagaggataggcaaatcttc
tcccaaatttcggagatcgaaaattctctggatatggttgacttcaaatctggaactgca
attcattacccttgtgagatttcaaaatcagtttattcagttgacgatactcattcagag
tttcctttggagcaaaggagttcttgttttgtggaagatgctggttttgttctggactgt
tgtagcaaatttcctctcttggaagtgaatgagttcggcttggagttttacatgagccca
tccataggagaacttcatttaatacttgaaaatattaaagatcagaactggacacaaaat
tttgacctagtggttgacggcaaggaccttttcggatctattgacatcaatcttttagag
tgtctgtcaggaccttgtccgctggagctgtgtcttgaacctgaatcaacttgtcttgac
ttggccctagaaatggaatttttttgcatacaagaggctgccgatcttaaaggcacttca
ccgatgcatctacagatgtcaggttgtgattttttctccatggtaagcccagttcagttt
caggaggttgagatccttgatttggagtcctttcaattttctgaagtctttgccaattca
cacctagaaaatggagctggaatatgtgaccagatgctcaaagacaacatggactccgtt
tggaatttttatgagtcaattgttaacaatgaactagcattggtggatgatacattcaaa
ccattgccgatacctgtgctatctgttgtggaagatatacagctgctatcggcccttgaa
gaagttctagctgtcatggaaccacttcctccatctgcatcagatgggatatatttagat
tggcatcttttggagggagaaacatggaacttggaggagatagacacctacaacactgat
gccgagctgaaatattttaatagtggaatggtgggaattgattttgttttctgggaggaa
gcaccagatgtgtccagtgtttcagaaagcaaggaaataatggttgaggtcactggtgtg
accttgggggtcaacgagcctcttactggagctgctcacagtcaattgtcaaaagatagt
caaaagctgggaataggagaagttgttcgtgagactagcattgataaggttacaatgttg
tttgaatctatgtcacaatccaatgatcttgattttttcctaaatcccaagaagtcaact
gcaaggagaagtggtgaaccagcagtcacagagaaaactgatggcgaagccaaacttcct
cttccttcatccagcaatccaacagcaatatgtgcttcagatgaagtgaaaccgcagcag
tgggacattgaggtccaccaaattaggctgtctgatcatattttgagccttgttgacaac
ttccaaaagagctacttaacaatcttggaaaatgaagttgctcttaaagagcaactttgg
ccattccctgttgtggataatttcaacttgcttagcattaaaaaacaaaatctggtggat
tggattaagaatataagttcaagacaaacaacactggcttgtggagatggaacagttgtg
gcacttgtcacattatatgcaatcaaacagatggcttgttacttgtgttttcatggcatc
catacagctcacttgtatgtagacaacttatctagaagtaacaaatacttgagatgcaga
ttaatcttactccaatccttgattcatgatgcttaccagaaggctgataccgaaataaca
gaatcacacccatccctgtccgttatccagggcattttgcggatgaaaacttctcaaagt
ggttcaaaagtattgattgttgctgaccaactattttggttgccattgaagagactgttg
aatgccatggggatattatttcatgaagtacaggatgttcataatcatgctgatcaaccg
gatgcctggaacagtaacatgttcacaaagattataatgaattccatgctgcattcagat
tgcttattaatgtcccatgagaatgtttctgcatcacttccattcaacaagttcaacatt
attttggaatatggaggttcatacagctcatcaaaaatattttccttttccccgaagata
tctggtctgcctcatcttcacttcctgaaggtggaattggaggattttagtgcccccaaa
gcactctgtgaagatttctatgcatcccattttgattttgcaatggaggacatctctcag
tcaatctcaacactaaatgagtgcatcaaggaccataagtttgaagaacagcttaacttt
gaacctgttaatgagaaatgtatggaatactccgatacagctgattacgtagaagattgc
agcaagtctacatcagttcctagcgtgccatttgcaatggaatccaagcagataaactca
gtcacacattatcctgatatagtcattgttgtgaacacacaaaattttgataaggaaatg
cttatttatcggagaagcacttaccaaaggattcttgcaatggagaaacagggggtgcaa
gttgtggagcgtgagatcaatttgcctgtggatctgatcttaagtgcagcagtatgtctt
gtgttgtatgattgcagaaacattggaaagaaagcaacagtgatggatgaagcttcttct
tgcatcactttgtatgttgagcatattgctacgaatattttgacatcattgagttttgct
ttcagcagttgcattttgatattcgagggtgaaagcagctttcttgctgacataatggat
ttatcagatgcactatatgctgctgcaactagcctgggattagatttacaactcttttgt
tcatattcggctgagttaactgatgacatcatcatgagctgcatcatatatgccactaag
ttaaataaaggcctatatccgaaaatgtttgaatctgaaacccttgcggagtcattcctt
accagctttccgtcaattaacccactctcagctcatgcaattctcacttctggaggcatg
cttgttgaatttcttgaatggtcatatgatcgcagaatccaggctattgggaagtatcat
gttcctgacgaaagccttgctttatttagtgctctgtgtagatatggagaacgagaggat
tccaaatctggaatgacggagtgttcgtcttcagtatctcctgctccagactcaggaaac
agtcactgtaaaactgagtgtgataggaaaaggagaaaatacatgacagatgctcacaca
tttcagatgcctatggaggagttgctttttgatgcaccacatcaatctacagatggcata
ctgaagccttctagaatgtgtcagccatatcattcacatgtctcctccatatgtcctgag
atatttgaaaaggttaagggccccaatttgtctccgagtgatcaatggttcgatcagaaa
gagggtttgaatatttctgtcgtgaatgatttgtactggaatggcaataattttgagaat
ttgcacggagactttaaaggtgaagttatagaccttaataatagttccttacctggggag
gacttctccattgcgaacatcacaaatttctcaccaggtgtgaaagatataaggttcaat
cctacaccaagaaattcttcagttttaagaaaatcattatttggcacaaaagatcttact
tgcttgccggcatccttagaaatcaattttggctcagatatctgcagttcccaaaaggat
caaaatcagaaattggagggaaacgtttgcgcacagatggatatagaattggacagggat
acattaccaatgaaatgccaaagagaattcttgaaagggagaacagcgaagggatcaact
gaagatggtggtggactgttatttccagataaaactgagacaccactctcgaatattatt
cattcatcacaactgcaacgacgatcaccctggacaatggaattccttaatagaataaag
gaaaaaagcaagatgcaccaacaatcccttccatgcgaccctaccatctcttgttttggg
tgccctgggaatgtacagaaagtagctaagagaagcccatctgtccttgatggtttccgg
tatcaaggaggcacctacccaaagaaaataatgaaacagaagcagcagaaaagactcgtg
caaccaagttcatgtaagaatgggaaggcttcagcctcccttcttccagtatggactccc
accgataagagagcgagacagactctttcttttgcgaggaatggaaatgaaacacagagt
aagctggtttgggctgatggaaatgttcatcgtctgaggaaaaaattacgaaatgaacta
taa
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