Telopea speciosissima (New South Wales waratah): 122655566
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Entry
122655566 CDS
T07910
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04120
Ubiquitin mediated proteolysis
tss04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122655566
04120 Ubiquitin mediated proteolysis
122655566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tss04121
]
122655566
Enzymes [BR:
tss01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122655566
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
U-box type E3
122655566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
122655566
NCBI-ProteinID:
XP_043705710
LinkDB
All DBs
Position
3:complement(13293763..13309078)
Genome browser
AA seq
1039 aa
AA seq
DB search
MATQKPLRSTEAVEDFILRKIFLVSLVDSMEDDSRIVYLEMTAAEILSEDKPLLLSRDLM
ERILIDRLSGQFPSAEPPFPYLVGCYRRAHEEGKNITSRKDKTIRSEMESVVRQAKKLAV
SYCRIHLGNPDMFPNGENNPPNKTTTSPLLPLIYSEVSSSIDGFGVSSSGVGLTCPPGFI
EEFFRDSDYDSSEPILKGLYEDLRGSVLKVSALGNFQQPLRALLMLVSFPNGAKALVNHP
WWVPKGTYVNGRVIEMTSILGPFFHVSALPDHTIFKSEPDVGQQCFSEASTRRPADLLSS
FTTIKTVMNNLYDGLGEVLLILLKNTDTRESVLEYLAEVIKKNSSRAHLQVDPLSCASSG
MFNNLSVVMLRLCEPFLDTNLTKRDKIDPKYVFHGTRLDLRSLTALHASSEEVTAWINKD
NPSDKKSDDENRILQSQEATSSGNNAGGPTLLSNARPMSSCSGKPKYSFICECFFMTARV
LNLGLLKAFSDFKHLVQDLSRCEDTLSTLKAMKGQAPSPQLELDIARIEKEIESYTQEKL
CYEAQILRDGAILQRALSFYRLMVVWLVDLLGGFKMPLPSSCPMEFACMPEHFVEDAMEL
IIFASRIPRALDGVLLDDFMNFIIMFMASPNFIRNPYLRAKMVEVLNCWMPNRSGSSVTT
SLFEGHALSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAW
RQIAREEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMANTTEWEQRPAQERQE
RTRLFHSQENIIRIDMKLANEDVGMLEFTSEQITVPFLLPEMVERVASMLNYFLLQLVGP
QRRALSLKDPEKYEFRPKQLLKQIVHIYIHLARGDKEKVFPAAISRDGRSYNEQLFTAAA
DVLRRIGEDGRVIQEFIELGGKAKIAASEAKDAEAALGEIPDEFLDPIQYTLMKDPVILP
SSRITVDRPVIQRHLLSDATDPFNRSQLTQDMLIPNVELKARIEEFIRSQESKKHGEGVN
MQNTKTTMQTVNEKMTLID
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacagaagcctctgaggtccacagaagcggtagaagacttcatccttcggaag
attttcttagtatctcttgtagattctatggaggatgattccagaatcgtatatttggag
atgactgcagctgaaattctcagcgaagataaaccccttttactttctcgggatttgatg
gaaaggattctcatcgatcggctctctggtcagtttccctctgccgagcctcctttccct
tatttggttgggtgttatcgtcgtgctcacgaggagggcaagaatattacatccagaaaa
gacaagactattcggtccgagatggaatccgtggtccggcaggcgaagaaattagctgtt
tcgtactgccggatccatctgggtaatccagatatgttccctaacggagaaaacaatcca
ccaaataagacgactacttcgccattactgcctttgatttactcagaagtttcgagctca
attgatgggtttggagtaagtagttctggtgttggattgacttgtcctcctgggtttata
gaagagtttttccgggactctgattatgatagctcggagccaatcttaaagggtttgtat
gaggatttgaggggaagtgttctcaaagtgtctgcgcttggaaactttcagcagcccttg
agggcgttattgatgttagttagctttcctaatggtgccaaggctctggtgaatcatccc
tggtgggttcccaaggggacttatgtcaacggtcgtgtcattgagatgacaagcattttg
ggtcctttctttcatgtcagtgctcttcctgatcatactattttcaagagcgagccggat
gttgggcagcagtgcttctcagaagcatcgactcgtcgcccagctgatttattatcttct
ttcacaactattaaaactgtcatgaataacttatatgatggtcttggagaagttcttctc
attctccttaagaacactgatacacgggagagtgttcttgaatatcttgctgaggtgatc
aagaaaaactcatcaagggctcatttacaggttgatccattatcttgtgcaagttccgga
atgtttaataatctcagtgtagtcatgcttcgactatgtgagcctttcttagatacaaat
ttgaccaaaagggacaaaattgatccaaagtatgtgtttcatggtacacgtttggattta
aggagtttaacagctctccatgcatcttcggaagaagttacagcgtggattaataaagat
aatccctctgacaaaaagagtgatgatgagaatcgcatattacaatctcaagaagccacc
agttctggtaacaatgctggtggacctactctcctctctaatgccagaccaatgtcaagt
tgtagtgggaaacctaaatattcattcatctgcgagtgtttctttatgactgccagggtg
ctcaacttgggcctgttaaaagcattttctgattttaaacatctagttcaggatttgtct
aggtgtgaagatactctgtccactttgaaagccatgaagggacaagcaccctctccacaa
ctggagttggatatagctcgcattgagaaagaaattgaatcatatacacaggagaagcta
tgttatgaagctcaaatacttagggatggagcaatacttcagcgtgcactgtccttctac
agactaatggtggtttggctggttgatcttttaggaggatttaaaatgcctctgccttca
agttgcccaatggaatttgcatgtatgccagaacactttgttgaagatgcaatggagttg
attatttttgcttctcggatccctagagcattggatggggtcttgctggatgattttatg
aactttatcataatgttcatggcaagtccaaattttattagaaacccatatctaagagca
aaaatggtagaagtcttgaattgctggatgcccaatagaagtggttcttctgtgacaact
tcactttttgaagggcatgcactgtctcttgaatatcttgtccggaatcttctgaagctt
tatgttgatattgagttcactggttctcacacacagttctatgacaagttcaacatacgc
cacaatattgccgaacttctcgaatacctgtggcaagttcctagtcatcgaaatgcatgg
agacagatagctagagaagaggaaaagggggtttatctgaacttcttgaactttttgatc
aatgatagtatctatcttcttgatgaaagtcttaataaaattcttgaactcaaagagttg
gaagctgagatggcaaataccacagaatgggagcaaagacccgcccaagagaggcaggaa
agaactcgactgtttcattcccaagagaatattatccgaattgatatgaaactggcaaat
gaagatgtcggtatgctagaatttacttccgaacagattacggttcctttccttcttcca
gagatggttgaaagagtggctagcatgttgaattactttttattacaacttgtgggccct
caacggagagctcttagtcttaaagaccctgaaaagtatgagttccggccaaaacaattg
cttaagcagattgtccacatttacatccacctggcgagaggagacaaggaaaaggttttc
ccagctgctatctcgagagatggtcgatcatacaatgagcagttatttactgctgcagca
gatgtgctacgaagaataggtgaagatgggagggtgatacaggaattcattgagttaggt
ggaaaggcaaaaattgcagcttctgaggcgaaggatgctgaagctgcactaggagagata
cctgatgagtttcttgatccaattcagtatacgttaatgaaggatcctgttattctacct
tcttcaagaatcactgtagatcgacctgtcatccaaaggcatcttctgagtgatgctacc
gacccattcaatcgttcacaactcactcaagatatgctgattcccaatgttgaactgaag
gcaagaatcgaagagttcatcaggtctcaagaatcaaagaagcatggggaaggtgtaaac
atgcaaaacacaaagacaactatgcagactgtcaatgaaaaaatgaccttgattgactag
DBGET
integrated database retrieval system
