Telopea speciosissima (New South Wales waratah): 122655707
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Entry
122655707 CDS
T07910
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122655707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tss04131
]
122655707
Membrane trafficking [BR:
tss04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122655707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_HPS5
zf_RING_Vps8
WD40_Prp19
WD40
Beta-prop_EML_2
WDR55
PEP5_VPS11_N
zf-RING_2
WDR90_beta-prop_4th
zf_RING_Vps8_fungal
WD40_like
Beta-prop_WDR11_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Mcl1_mid
Motif
Other DBs
NCBI-GeneID:
122655707
NCBI-ProteinID:
XP_043705930
LinkDB
All DBs
Position
3:32627582..32685310
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AA seq
960 aa
AA seq
DB search
MAQNPSENGMEGDDEREEEEEEDEDEEEAADEGEEEEEEEEDEPRLKYQRMGGSISSLLS
NDAASCIAVSERMIALGTHDGTVHILDLLGNQVKEFSAHTATVNDLSFDIEGENVGSCSD
DGFVVINSLFTDESMKFDYRRPMKTIALDPLYSRNSSRRFVTGGLAGHLYLNSKKWIGYR
DQVLHSGEGPVHAVKWRTSLIAWANDAGVKVYDTANSQRLAFIERPQGSPRPELLLPHLV
WQDDTLLVIGWGTSVKIAAIRANQYNGTNGIQRPISISSTKHVDIVASFQTSYFISGIAP
YGDALVVLAYIPEKEDGEKELSSSVPSRQGTAQRPEVRIVTWKNDELATDALPVHGFEHY
KAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHISWLLQHGWHE
KALAAVEAGEGRNELLDEVGLRYLDHLILDRKYAEAASLCPKLLRGSASAWERWVFHFAH
LRQLPVLVPYIPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPPAIYSALPVISA
IEPQFNTSSMTDSLKEALAELYVINAQYERALALYADIMKPEIFDFIEKHNLHDAIHDKV
VQLMVLDCKRAVSLLIQHRDMITPSEVVSQILDANDKCDSRYFLHSYLHSLFETDPHAGK
DFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYDICVKRDLLREQVFILGRMGNSKQAL
AVIINKLEDIEEAIEFVAMQHDDELWEELIKQCLHKPEMVGVLLEHTVGNLDPLYIVKMV
PNGLTIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARHAVYLDTGEE
ETRAKRDDNRAAQANAKVAGMGTMELKSKTRGGGRCCVCFDPFSIQNVSVIAFFCCHAYH
ITCLMDSTNSTGRKSGAQGNFQESVSNHDYXDYDDDNDDTQSGASRMRCILCTTAAGSHL
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcccagaatccttcagaaaacggaatggaaggtgacgatgaaagagaagaagaagaa
gaagaagacgaagatgaagaagaagcagctgatgaaggagaagaagaagaagaagaagag
gaagacgagccgaggctaaagtaccagaggatgggagggagcatctcttcgcttctctcc
aacgatgccgcttcttgtatcgctgtttccgagcggatgattgctcttggcacccacgac
ggcaccgttcacatcctcgatttactcggtaatcaggttaaggaattttctgctcacact
gctactgtcaatgaccttagctttgacatagaaggtgaaaatgtaggaagctgttcagat
gacggatttgttgtgataaacagccttttcactgatgagagcatgaaattcgattatcgt
cgtcctatgaagaccattgctctagatccactttattcaagaaattcttctcgaagattt
gttactggtggtttagcgggtcatctgtatctaaactcaaaaaaatggataggctaccgt
gaccaggttctgcactctggtgaaggtccagtacatgcagtgaagtggagaacaagtctt
attgcttgggctaatgatgcaggtgtgaaagtttatgacactgccaatagtcagcgactt
gcatttattgagagaccacaaggaagcccacgtcctgagctcttgctccctcacttggtt
tggcaggatgatactctcttggttattggctggggaacatctgtaaaaattgctgcgatc
agagcaaaccaatataatggaaccaatgggatacaaaggcctatatccatatccagtaca
aagcatgtggatattgtggcatcttttcaaacaagctatttcatttcaggaattgctccc
tatggtgatgccttggttgttcttgcttatattcctgagaaagaggatggagagaaggaa
ttaagcagttcagttccatcacgccagggaactgcacagaggccagaagtacgcatagtc
acatggaaaaatgatgaacttgcaacagatgctcttcctgtgcatggctttgaacattac
aaggcaaaggattattcccttgctcatgctcctttctcaggtagcagctatgcaggtggt
caatgggctgctggtgatgagccattatactacattgtatctccaaaggatgtagttatt
gcaaagcctagggatgctgaagatcatatatcttggcttcttcaacatggatggcatgaa
aaagcattagctgctgttgaagcaggagagggacggaatgagcttcttgatgaggtgggt
ttgcgatatcttgatcatctgattttggataggaaatatgctgaagctgcgtctctatgt
cccaagttattacgtggatctgcttctgcatgggagagatgggttttccactttgctcat
ctccgccagcttccggtgttggttccatacataccaacagaaaaccccaggttgcgtgat
actgcttatgaggtggctcttgtagccctagcaacaaatccatctttccacaaggatctc
ctatcaactgttaaatcctggccaccagcaatatattctgctttgcctgtgatatcagca
atagaacctcagtttaatacttcgtctatgaccgactcactcaaagaggcattagctgag
ttgtacgtaatcaatgcacaatatgagagagcactagcattgtatgccgatattatgaag
cctgaaatattcgacttcatcgaaaaacataatttacatgatgccattcatgacaaggtt
gttcaactgatggtattggactgcaaacgtgcagtctctttactgatccaacacagggac
atgattactccatctgaagtagtttcacaaatcttggatgccaatgataagtgtgattca
agatatttcttgcactcgtatctgcattcactttttgaaactgatccacatgctgggaag
gacttccatgacatgcaggtagagctctatgcagattatgatccaaagatgctgcttcct
tttcttcgtagtagtcagcattacacacttgaaaaggcatatgacatttgtgtcaaaaga
gatcttctgagagagcaggtgttcatccttgggaggatgggaaattcaaagcaggccctt
gctgttatcataaataaattggaggatatagaagaggctattgaatttgtggccatgcag
catgacgatgaactttgggaagaactaattaaacagtgtctccacaaacctgaaatggtg
ggtgtgttgttggaacacactgttggcaatcttgatccactttatattgtaaaaatggtg
cccaatggtttgacgataccccggcttagggatcgattggtcaagattatcacggattac
aggactgagacatctttaagacatggatgtaacgatatcctcaaggcagactgtgtcaac
ttgttggttaaatattacaaggaagcccggcatgcagtttacttggatactggagaagag
gaaactcgagcgaaaagggatgataatagagcagctcaggcaaatgctaaagtagctggt
atgggaacaatggagctcaagtcgaaaactaggggtggtggaaggtgttgtgtgtgcttc
gatcccttctctattcagaatgtctcagtcattgcattcttctgctgtcatgcctaccat
attacctgtctcatggattccacaaattccaccggtcgtaagagtggggcccaaggaaat
tttcaagaatctgtatcaaatcatgattatnatgattatgatgatgataacgatgatacc
cagtcgggtgcatctcgcatgcgttgtatcttatgtacgacagctgcagggtcacatttg
taa
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