Telopea speciosissima (New South Wales waratah): 122655860
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Entry
122655860 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic isoform X1
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122655860
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122655860
Spliceosome [BR:
tss03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122655860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
DNA_pol_phi
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
122655860
NCBI-ProteinID:
XP_043706166
LinkDB
All DBs
Position
3:9459594..9495045
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AA seq
1172 aa
AA seq
DB search
MRTTSISSSLSELPHLLPFFSNSGNTCVFLQHNAIFRNLGFSIPRTFVTLRTTSSLSLLA
QGYPRAISHSANQLSDVEEEEEEDDEDEDDDDDEAADEYEEFSVDLFDDNKYEDDEIDST
TMEAPPQFEGQKWQRVDRLRSQVREFGEEIIDLDELASIYDFHIDKFQRLAIQSFLRGSS
VVVSAPTSSGKTLIAEAAAVATVVRGRRLFYTTPLKALSNQKYREFRETFGESNVGLLTG
DSAVNKEAQILIMTTEILRNMLYQSIGMVSSGSGLFHVDVIVLDEVHYLSDISRGTVWEE
IVIYCPKEVQLICLSATVANADELAGWIGQIHGTTELVKSMKRPVPLTWHFSMKNSLLPL
LNEKGTSMNRNLQLSALGGESYKEDGSGRRNSRRREKASYKSGSISVQSTSSKDDTNTIR
RSQVPQVKDTLWYLRQKDMLPAIWFIFSRKGCDAAVQYLEHYKLLDDCETSEVELALKRF
RVQYPDAVRESALKGLLNGVAAHHAGCLPLWKSFIEVLFQQGLVKIVFATETLAAGINMP
ARTAVISSLSKRSDSGRTHLSPNELLQMAGRAGRRGTDERGHVVLVQTPNEGAEECCKVL
LSGVEPLVSQFTASYGMVLNLLAGAKVTRRSKEAEMKVLKAGRTLEEARKLVEQSFGNYV
GSNVMLAAKDELAEIQKEIEVLTLEVSDDAVDRKSRKQLSEKAYREISDLQEELREEKRL
RTELRRRMELKRITSLKPLLKEMENGDLPFICLQHNKEGVQHLLPAVYLGKADALSGLKF
KNMIYADGSSTLNIMDKELDFGDMEAQFDAKPSYYVALGSDNSWYLFTEKWIKVVYGTGF
PNVPLVQGGALPRETMRAHLDKEEMQWEKLAHSEFGDLWCTEGSLETWSWSLNVPGLSSL
SDENGVLQMSQAYEDAVECYKDQRTKVSRLKKKIARTESFKEYKKIIDMTNFTKEKIERL
KARSVRLVSRIEQIEPSGWKEFLQISNVIHEARALDINTKVIFPLGETASAIRGDNELWL
AMVLRNKILLDLKPPQLAAVFGSLVSAGIRVRPWKNNSYIYEPSTTVVNIVNFLDEQRSS
FLKLQEKHGVKIPCELDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQ
IPKLPDIGPVLQNNAMIASNVMDRPPISELAG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgcggaccacctctatctcatcatctctttcagaactacctcatcttctcccttttttc
tccaacagcggcaacacttgtgtctttcttcagcacaatgccattttccgaaacttagga
tttagtattcccaggacgtttgtcacattaaggacaacttcatctctttctctgctagcc
cagggttatcctcgggccatttcccattcagcaaatcaactctccgatgttgaagaagaa
gaagaagaagatgacgaagacgaagacgacgacgacgatgaagctgcagatgagtacgag
gagttctctgttgacttatttgacgacaataaatatgaggacgacgagattgactcgaca
acaatggaggcacctccccagttcgaggggcaaaaatggcagagagtggacagacttcga
tctcaagtacgagagttcggcgaggaaattatcgatttggatgagcttgcttccatttac
gatttccacatcgataaatttcagaggttggctatacaatctttcttgagaggttcgtct
gtggtggtttctgcaccgacgagtagcggaaagactctgatagcagaagcagcagctgta
gccacagtagtgagaggaaggcgactcttctatacaactcctttgaaggcattatctaat
caaaagtatcgagaatttcgagagacatttggtgaaagcaatgttggccttctcacggga
gattctgcagtcaacaaagaggctcaaattttaatcatgactactgagattttgcgcaat
atgttatatcaaagtattggaatggtttcttcagggagtggattgtttcatgtcgatgtg
attgttttggatgaagtacactatctcagtgacatatctcggggtacagtttgggaagaa
atagtgatttattgcccaaaagaagtccaacttatatgtctttcagcgacagttgcgaat
gccgatgagctggccggctggattgggcagattcatggtacaactgagctggtaaaatca
atgaaacgaccggttccattgacttggcatttctctatgaagaattctttgttacctcta
cttaatgagaaaggaacgagcatgaacaggaacctacagctttctgctttgggaggtgag
tcttataaggaagatggatctggaagaaggaattctagaagacgtgaaaaagcgagttac
aaaagtgggagcatttctgtgcagtcaacatcatcaaaagatgacacaaatacaattcgc
cgttcacaagttcctcaggttaaagacacgttgtggtacctcaggcaaaaggatatgctg
cctgctatttggtttatttttagcaggaaaggatgtgatgcagctgttcagtatcttgaa
cattacaagcttttagatgactgtgagacaagtgaagttgaactggccctgaaaaggttt
cgtgtacagtaccctgatgctgtccgagaatctgccttaaaaggccttctgaacggggta
gcagcacaccatgctggctgtctacctttgtggaagtcatttattgaagtgttgtttcag
caaggacttgttaaaattgtctttgctaccgaaacccttgctgctggcatcaacatgcct
gccaggacagctgttatttcatctctcagtaaaaggagcgacagtggacgtacccatttg
agcccaaatgagttgcttcaaatggctggtcgagctggacgtagaggtaccgatgaaaga
ggtcacgtagttcttgttcagactcctaatgaaggagcagaagaatgctgcaaggttctt
ctttctggagtagagcctcttgtctctcagtttactgcttcatatggcatggtgctaaat
ctccttgcgggtgcaaaagttactcgcagatcaaaggaagcagaaatgaaagttttgaaa
gcaggacgaacactggaagaagcccgaaagctagttgagcaaagttttggaaactatgtt
gggagcaatgttatgcttgctgccaaagatgagcttgctgaaatacagaaagaaattgag
gtgctgactttagaagttagtgatgatgctgttgataggaagagtcggaagcagttatct
gaaaaagcatacagggagatttctgatctgcaggaggaattacgggaggagaaacgattg
cggactgaactgcgacgaaggatggaactaaagaggattacttctttgaaacctctattg
aaggagatggaaaatggtgatttaccctttatctgtttgcagcataataaagaaggagtt
caacacttattacctgctgtttatttggggaaggctgatgctctttctggtttaaaattc
aagaacatgatttatgcagatggttcttctacacttaatatcatggacaaagagttggat
tttggagatatggaagcacagtttgatgccaaaccatcttattatgtggctcttggttcg
gataactcttggtatttgttcacagagaagtggatcaaagtggtgtatggaactggattt
cctaatgttcctttagttcaaggtggtgctttgcccagggaaacaatgagagctcacctt
gataaggaagaaatgcagtgggagaaacttgctcattctgaatttggagatctgtggtgt
acagaaggatctcttgagacatggtcttggagtttaaatgtgccaggcttgagtagcctc
tcagatgaaaatggggtgctgcaaatgtcacaagcatacgaggatgctgtagagtgttac
aaggatcaaagaactaaagtttcccgtctgaagaaaaagattgctcgtacagaaagcttc
aaagagtataagaaaatcatagatatgactaactttactaaggaaaagattgaacgcttg
aaggctagatcagttcggcttgttagtcgaatagagcaaattgaaccatctggctggaag
gagttcctccagatcagtaatgtcatacatgaagccagagcattggatattaatacaaaa
gtgatatttcctcttggtgagacagcatcagcaatacgaggagacaatgaactctggctt
gcaatggtgctccgaaataaaattttactagatttaaagcctccacagcttgctgctgtc
tttggaagtttagtttcagcaggaatcagagtccgtccttggaagaacaacagctatata
tatgaaccttcaactactgtagtcaatattgttaactttttggatgagcaaagaagctcc
ttcttaaaactacaagaaaaacatggggttaagataccctgtgagttggatagtcaattc
tctggcatggttgaagcttgggcctctggtttaacttggcgggaaataatgatggattgt
gcaatggatgaaggggatttagctcgcctcttacgccgtacaattgatttattggctcag
attccaaaattgcctgatattggtcccgtcttacaaaacaatgccatgattgcatccaat
gtcatggaccgaccgccaataagtgagctggctggatga
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