Telopea speciosissima (New South Wales waratah): 122656045
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Entry
122656045 CDS
T07910
Name
(RefSeq) eukaryotic initiation factor 4A-3-like isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03015
mRNA surveillance pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122656045
09122 Translation
03013 Nucleocytoplasmic transport
122656045
03015 mRNA surveillance pathway
122656045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122656045
03041 Spliceosome [BR:
tss03041
]
122656045
03009 Ribosome biogenesis [BR:
tss03009
]
122656045
03012 Translation factors [BR:
tss03012
]
122656045
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122656045
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122656045
mRNA cycle factors
Stress granule specific factors
122656045
Spliceosome [BR:
tss03041
]
Complex C
Other components
EJC/TREX
122656045
Ribosome biogenesis [BR:
tss03009
]
Eukaryotic type
90S particles
Helicases
122656045
Translation factors [BR:
tss03012
]
Eukaryotic type
Initiation factors
eIF-4
122656045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
122656045
NCBI-ProteinID:
XP_043706408
LinkDB
All DBs
Position
3:complement(19161986..19192834)
Genome browser
AA seq
414 aa
AA seq
DB search
MAAATASAAPSNRTGRRNGQGPGVDDDNLVFETSPGVEAISSFDQMGIKDDLLRGIYQYG
FEKPSAIQQRAVLPIIKGRDVIAQAQSGTGKTSMIALTVCQMVDTSTREVQALILSPTRE
LASQTEKVILAVGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLR
TRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHDILEITSKFMTDPV
RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM
RSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNN
RELYIHRIGRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcgacagcctcagctgctccatcgaaccgtactggccggcgaaacggacag
ggacccggtgtagacgacgataacctagtgttcgaaacaagtcctggcgtggaggctatc
tcgtcattcgatcagatgggtatcaaagacgatcttctccgagggatttaccagtacggg
ttcgaaaagccatcggcaatacagcagagagcggttttgcctatcatcaaaggtcgtgat
gtgattgctcaggcacaatctggtactgggaagacctccatgattgccctcacggtctgc
cagatggtcgatacctccaccagagaggtccaagctttgatcttgtcaccaaccagagaa
cttgcttcacagactgagaaagtaatattagcagttggtgatttcataaacatacaagcc
catgcttgtattggcggcaaaagtgtaggtgaagatataaggaaacttgagtatggagtc
catgtagtgtctggaactccaggcagagtctgtgacatgatcaagagaagaacattgcgt
acaagggccatcaaattattaatcctggatgaatctgatgagatgttgagcagagggttt
aaggatcaaatttatgatgtttacagatatcttccgccagagcttcaggttgtactgatt
tctgcgacccttcctcatgacatattggaaattacaagcaaatttatgacagatcctgtt
aggatccttgtgaaacgtgatgagttgactttagagggcatcaaacaattctttgttgct
gttgaaagagaagagtggaagtttgatactttatgcgatctttatgatacacttaccatc
acccaggctgtcattttctgcaatacaaagcgcaaggtggattggctaacagagaagatg
cgtagcaataatttcacagtctcttcaatgcatggagatatgcctcaaaaggaacgggat
gctataatggcagagttcaggtcgggaacaacccgtgtcctcatcactacagatgtttgg
gctcgggggctcgatgttcaacaggtgtctttggtgatcaattatgacttgcccaacaac
cgtgagctttacattcacaggataggtcgatctggccgttttggacgaaagggtgttgca
ataaactttgtccgcagtgatgacataaggattctcagggatatagaacaatattacagt
acacagattgatgagatgccaatgaatgtggctgatctgatttaa
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