Telopea speciosissima (New South Wales waratah): 122656153
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Entry
122656153 CDS
T07910
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122656153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122656153
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122656153
Spliceosome [BR:
tss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122656153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
AAA_30
PWI
nSTAND3
T2SSE
ResIII
nSTAND_NTPase5
AAA_16
PhoH
TsaE
AAA_7
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122656153
NCBI-ProteinID:
XP_043706544
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All DBs
Position
3:13738853..13791138
Genome browser
AA seq
1046 aa
AA seq
DB search
MLDESNLKTWVSDKLMTLLGYTQPTVVQYVIGFSKQASSPADVLGKLVEFGLSSSTETTV
FAEEIFSRVPRKASGLNNCQKQEKDAAMLVRKQKSYTILHADDDEDDDDNRGGDKISSQS
NKTDSHQKRFRKKTEYQDDEDEAVRREEKDRRVRSRASEVEDNLEAEEARLRDQEERVQL
EMNIRERDAAATRKFAEPPKLSRKEEEEAIQRFKALEEDDTATLRKVSRQEYLKKREQKK
LEEISDDIEDEQYLFEGVKLTEAEHRELRYKKEILELVKKRSEDLDSYTEYRMPEAYDQE
GGVNQEKRFSAALQHYRDLSSGDKMNPFAEQEAWEENQIGKATLKFGSKDKKQKSDDYQY
VFEDQIEFIKASVMEGDKFEGELPEEQLQKMEISALQKLQDERKTLPIYTYREKLLQAIH
EHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAMSVAKRVSEEMGVKLG
HEVGYSIRFEDCTSETTVLKYMTDGMLLREFLSEPDLASYSVMMIDEAHERTLSTDILFG
LVKDIVRFRSDLKLLISSATLDAEKFRDYFDSAHIIKIPGRQFPVDILYTKAPEADYLDA
AVVTILQIHVTEPPGDILVFFTGQEEIERTEEILKHRTRGLGTKIAELIVCPIYANLPTE
LQAKIFESTPEYARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLQINPI
SKASAKQRAGRSGRTGPGKCFRLYTAYNYHVLEDKTVPEIKRTNLANVVLTLKSFGIHDL
LNFDFMDPPPSEAIFEALELLFALNALNNRGELTKVGRRMAEFPLDPMLSKMIVASEKYK
CSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHCALLKVYSSWKETNFS
TQWCYEHYIQVRSMKRARDIRDQLEGLLERVEIELISNPNDLENIKKAITSGFFHHSARL
QKNGFYGTVKNPLTVFIHPSSGLVQVLPRWVVYHELVLTSKEYMRQVTGIKSEWLVEIAP
HYYQLKDVEDSGSKKMPRGQGRTDKH
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgctggacgaaagtaatttgaaaacatgggtatcagacaagttgatgactcttttggga
tatactcagcctacggttgtccagtatgtcattgggttttctaagcaagcttcttctcct
gctgatgttttgggcaagcttgttgagtttggtttgtcttcatcaactgagaccacagtg
tttgctgaagaaatattttctagagttccgcgtaaagcatccggtttgaataattgccag
aaacaagaaaaagatgcagctatgttggtaaggaagcagaagagttacacgatcttgcat
gctgatgacgatgaagacgatgacgataatcgtggtggtgacaaaatctcttctcaatca
aataaaacagattcccatcaaaagcgttttcggaagaaaactgagtatcaagacgatgaa
gatgaggcggtcagacgagaagaaaaagatagacgtgtccggtcgcgcgcctctgaagtt
gaagacaacttagaggcagaggaagcgaggttacgtgatcaggaagagcgggtacaacta
gagatgaacataagagaaagagatgcagcagcaacacgaaagttcgcagagccgccaaaa
ttatctcgaaaggaggaagaggaggcaattcagagatttaaagccttagaggaagacgat
accgcaactctgagaaaagtctcgagacaagaatacttaaagaaaagagagcaaaaaaag
ctggaggagatcagtgatgacatagaagatgagcaatatctctttgaaggtgtcaaacta
acagaggcagaacatcgtgagctaaggtataagaaagaaattcttgagcttgtgaagaag
cggtctgaagatctggatagttatactgagtaccggatgcctgaagcctatgatcaagaa
ggtggtgtaaatcaggagaagaggttttctgcagctctacagcattatagggaccttagt
tcaggagataagatgaacccatttgctgagcaggaggcatgggaggagaatcagattgga
aaggcaaccttgaagtttggttcaaaagataaaaaacaaaaatctgatgattatcagtat
gtgtttgaggatcagattgagttcatcaaagcatctgtgatggagggtgacaagtttgaa
ggtgaactgcctgaggagcagcttcagaagatggagatatcagcattacagaagcttcag
gatgagagaaaaactctgcctatctatacatatcgagaaaaactactccaagctatccat
gagcatcaggttcttgtaattgttggtgagactggatctggaaagacgactcagatacct
cagtatcttcacgaagctggctacacaaaacatgggaaggtaggatgtactcaaccacga
cgtgttgcggccatgagtgtcgctaaacgagtttctgaggagatgggagttaagcttggt
catgaggttgggtactctatccgctttgaagattgtacatctgagacaacagttcttaag
tatatgacggatggaatgttgctgagagaattccttagtgaacctgatctggcaagttac
agtgtgatgatgatagatgaggctcatgaaagaacgctctcaacggatattttatttggt
ttagtcaaggacattgtccggtttcgaagtgatcttaagttgctcatctctagtgctact
cttgatgctgagaaattccgtgattactttgattcagcccatattattaaaattccggga
agacaattccctgtcgatatactttacacaaaagcgcctgaagctgactacctggatgct
gctgttgtcactatccttcaaatacatgtgactgaaccaccgggtgatattctggtgttc
ttcacaggacaagaggaaattgaaagaacagaagagatattgaaacaccggacccgaggc
ctaggaacaaagattgctgaactaatcgtctgcccaatatatgcgaatcttcctactgag
ttgcaagctaaaatttttgaatccactccggaatatgctcgtaaggttgtcttggcaact
aacatagcagagacctcattgacaattgacggaattaaatacgtcattgatcctggattt
tgtaagatgaagtcttataacccaagaactggcatggaatcactacagatcaatcccatt
tctaaagcatcggcaaagcaaagggctggtcgatctggacgaacaggtccaggaaagtgt
tttcgtttgtatactgcctacaattatcatgttttggaagataagaccgtgccagagata
aaaagaactaaccttgcaaacgttgttctcactcttaagagctttggaattcatgatttg
ctaaattttgatttcatggaccctcctccgtctgaagcgattttcgaagccctagagttg
ctttttgcacttaatgcactgaataatcgaggggagctcacgaaggtcggcagaagaatg
gcagagtttcctcttgatccaatgctttctaaaatgattgttgcttcagagaagtacaag
tgttcagatgagataatatcaattgctgcaatgctttcagttggaaattcaatcttctac
cgtccaaaggacaagcaagtccatgctgacaatgcaaggatgaattttcatactgggaat
gttggggaccattgtgcattacttaaggtttacagttcttggaaagaaactaatttctca
actcagtggtgctatgaacactatattcaggtcagaagtatgaaacgtgctcgggatata
agggaccagttggagggtctgttggagagggttgagattgaactgatatccaaccccaat
gatttagaaaacataaagaaggcaataacttcaggatttttccaccattctgccaggctg
caaaagaatggattttatggcacagtcaaaaatcctctgactgtttttatacatccaagt
tctggtcttgtacaggtgctccctaggtgggttgtttatcatgagcttgtacttacatca
aaggaatacatgagacaggtcactggaataaaatccgagtggttggtggaaattgcacct
cactattaccagctgaaggatgtggaagattctggatcgaagaaaatgcctcgtggacaa
gggcgcacagataagcattga
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