Telopea speciosissima (New South Wales waratah): 122656458
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Entry
122656458 CDS
T07910
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122656458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122656458
03036 Chromosome and associated proteins [BR:
tss03036
]
122656458
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122656458
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122656458
PBAF complex
122656458
GBAF(ncBAF) complex
122656458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
KH_PARP14_1
ZZ
Motif
Other DBs
NCBI-GeneID:
122656458
NCBI-ProteinID:
XP_043706911
LinkDB
All DBs
Position
3:2449781..2467913
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AA seq
565 aa
AA seq
DB search
MENTEGANSKLSPLNEPEQELYTIPGYSSWFFWDDINEIEKDSLKEFFDGSSISRTPKVY
KAYRDFIINKFREEPLRKLTFTEIRKSLIGDVNLIHKVFLFLEKWGLINFISTTSSPVNG
PKFAEESSKVKLEEGAPNGIRVVAIPNPSKIVLLSPSGNDAGEAVNNGFRLPPLASYSDV
FGDLLRRKESVCGNCGETCVSGRYESTKGNFVICIKCFKSGEYGESKTLDDFKFIDCKDN
GGDNLWTDAETLLLLESVLKHGDDWDLVAKNVQTKSKIECILRLIQLPFGELMLGSTNGK
GDGGNLNGSTSNVKQVPSTLVDSQTPIKSDDQCYTRTNEADLIGEDEAQGPPLKQRCIDA
LADASGSLMKQVALLSTMVGPHVTAAAAAAEAAVGALCNENQHAREIFGGMEDKVSNQFG
FPHSNNKAEGALSVADLKMGENDMRSEEDVFPPENSIPLALRIRVAIATAFGGAAAHAKL
LADQEDREIECLMATIIETQMKKIHCKIKHFQELELIMDKEYSLIQELKESLIEEWIDVF
QKTFNAGISRWRDHATVKSFAGNVF
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggagaacacggaaggcgcgaattctaaactatctcccttaaacgaaccagagcaggag
ctttacaccatcccaggctactccagttggtttttctgggacgatatcaatgaaatcgag
aaagattctttgaaggagttcttcgatggaagctctatctccagaacaccgaaagtatac
aaggcatacagggatttcattattaacaagttcagggaagagcctcttaggaagctcacg
ttcacggaaattcggaagtcgttgatcggtgacgttaacttgattcataaggttttcctt
ttcttggagaaatgggggctgattaatttcatttctactacctcatcgccagttaatggg
ccgaaatttgccgaggagagctcgaaggttaagctcgaggaaggtgcccccaatgggatc
cgggtggtcgctattccgaatccttctaaaattgttttgctatcaccgagtgggaatgat
gctggtgaagctgtcaacaacgggttccgattgccgccactcgcatcttactcagatgtt
tttggtgaccttttgcgcagaaaggaatcagtttgtggaaactgtggggaaacttgtgtg
tctggtcgctatgaatctaccaaggggaactttgtaatttgtataaaatgcttcaaaagt
ggggagtatggggaaagcaagactctagatgatttcaagttcatcgattgcaaagataat
ggtggagacaatctttggactgatgcagaaactcttcttcttttagaatctgtccttaag
catggagatgactgggaccttgtggcaaaaaatgttcaaaccaaaagtaaaattgaatgc
atcttaagactcatacaactcccttttggagagcttatgttgggttcgaccaatgggaag
ggcgatggcgggaatttaaatggcagtacaagtaatgtcaaacaagttccatctacttta
gttgattctcaaacgccaatcaaaagtgacgatcaatgttacacacgtacaaatgaggct
gatctgattggggaggatgaggcccaaggccctcccttgaagcaaagatgcattgatgca
cttgcagatgctagcggttcactgatgaaacaggtagctctgctatctacaatggtgggg
ccccatgttacagctgctgctgctgctgctgaggctgctgttggggctttgtgcaatgaa
aaccagcacgcgagggagatatttggaggaatggaggataaagtctccaatcaatttggg
tttccccattcaaataacaaagcagagggagccctttcagtggctgatttgaagatggga
gaaaatgacatgcgctcagaagaggatgtgtttcctccagagaactccatacctctggca
ttgcgaattagagtggcaattgcaacggcttttgggggagctgctgctcatgccaagtta
ttagcagatcaggaagacagagaaattgaatgtttaatggcaactatcatagagacacag
atgaagaagatacactgcaaaatcaaacatttccaagagctggagttgatcatggataag
gaatactccctgatacaggaattaaaagagtcactcattgaggagtggattgatgtcttt
caaaaaacattcaatgcaggcatttcaagatggagggatcatgctactgtaaaatctttt
gcaggaaatgtattttga
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