Telopea speciosissima (New South Wales waratah): 122656835
Help
Entry
122656835 CDS
T07910
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122656835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122656835
03036 Chromosome and associated proteins [BR:
tss03036
]
122656835
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122656835
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122656835
PBAF complex
122656835
GBAF(ncBAF) complex
122656835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
122656835
NCBI-ProteinID:
XP_043707432
LinkDB
All DBs
Position
3:40365473..40399984
Genome browser
AA seq
805 aa
AA seq
DB search
MSATLSFVTETRGKWKKRKRDANLGSNIKKQRPEEEDEEEEDDDEADFEEEEETHTIAGA
NAAPTEPFNDARESEILYDDGGVRVSEFPPVTKRIVNQPHSSVLSVIAAERAIQFPEQHF
LQNQNAFFFENISHGQLQALSAVPADSPSLAPSDHDRDRPDAPPPAYVCTPPAIMEGRGV
VKRFGNNRVLVVPMHSDWFSPNLVHRLERQVVPHFFSGKSAEHTPGKYMDCRNRVVAKYM
ENPEKRLRINNCQGLAPGIDFNDLNRIFRFLDHWGIINYSVVTITHEHMVDGPYLREDLN
GEIQVTSAALKSIDSLIQFDKPKSRLRASDVSFLSFGPGNEVSDLDSRIRERLAENQCIY
CSCPLPRLHYQSQKEADILLCSDCFHDGRFVSGHSSVDFIKVDSIRDLCDLVGDNWTDQE
TLLLLEALETYNDNWNEIAEHVGTKSKAQCILHLIRLPMEDGLLENIEVPSKSVSTKVSS
RGEDGGQYSNPNCDPAGLDSESRIPFENSANPLMALVAFLASAVGPRVAAACAHASLAAL
SKEEHQSVASNNIFQLESSVHGDRISSESACGREGNFHGGLTSSCHQKEESMAEHGFCGK
KDTVSAQLPIGSVKNAAKFGLAAAATKAKLFAEHEEREIQRMAATIINHQLKRLELKLNQ
FSEVDTLLMKECEQMERTRQRIVAERARIISTRFGPAGTSNTTLPGAAAVASSSAVNNRP
QLISASPALTNISAYGNNQASHPHMSFMPRPQMFAYGPRLPLSAIHPSSSAPSSSVMFTS
PGNVAHPSLNHPLLRPVSGTNTNVG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctactctatctttcgttacagaaactcgtggtaagtggaagaagaggaagaga
gatgctaatctcggaagcaacatcaagaaacagagacccgaagaagaagatgaagaagag
gaagacgacgatgaggcggactttgaggaagaagaagaaactcacaccatcgccggcgca
aacgccgctcctaccgagcccttcaacgacgcacgagaaagcgagattctctatgacgat
ggtggtgttcgggtttctgagttccctcccgttactaagcgcattgtgaatcaaccacac
tcttctgttctctccgttattgctgcagaacgtgccattcaattcccagaacagcacttt
ctgcaaaaccagaacgctttcttcttcgaaaacatttctcatgggcagcttcaggcatta
tcggctgttccagctgatagtccttctctagccccttctgatcacgacagagacagacct
gatgcacctccacctgcctatgtatgtactcccccggcaatcatggaaggtcgaggcgtt
gtcaagcgattcgggaataatagggttcttgtcgttccgatgcactctgattggttttca
cccaatttggtgcacagattggagaggcaagttgtgccacatttcttttcaggcaagtct
gcagagcatactccagggaaatatatggattgcaggaatcgggttgttgctaagtatatg
gagaatccagagaagaggctcaggattaacaattgccaagggttggctcctggtattgat
ttcaatgatttgaatcgaatttttaggtttctggatcattggggaatcattaattatagt
gtggttacgataactcatgagcatatggttgatgggccgtatctgagggaggatctaaat
ggggagattcaagttacctcagctgctttgaagtcaattgatagtttgattcagtttgat
aagcccaagagcaggctcagggcttctgatgtttctttcttgtcgtttggtcctggtaat
gaggtctctgatttggatagcagaattagggagcggttagctgaaaatcaatgcatttat
tgttcttgccccctacctcgtttgcattatcagtcacagaaggaggctgacattctactt
tgctcggattgcttccatgatgggagatttgttagtggtcactctagcgttgattttata
aaggtggactccataagagatttgtgtgaccttgttggagacaattggactgaccaggaa
acacttcttctgcttgaggcactggaaacctacaatgacaactggaatgaaattgctgag
catgttggtaccaagtctaaagcacagtgcatccttcatttaattcgtctgcccatggag
gatggcctactggagaatattgaagttccaagtaaatctgtttcaactaaagtgtcaagc
agaggtgaagatggagggcaatattcaaatcctaattgtgatcctgcaggccttgattct
gaaagcagaatcccatttgagaattctgcaaatcccctcatggctctggttgcctttctg
gcctctgcggtggggccaagagttgctgcagcctgtgctcatgcatcgttagcggcattg
tccaaggaagagcatcaatcagttgcttcaaataacatcttccaactggaaagctctgtt
catggagataggatcagttcagagagtgcatgtggcagagaaggtaattttcatggagga
ctaacaagctcatgccaccagaaagaggaaagcatggcagaacatgggttttgtggtaaa
aaagatacagtttctgctcagttgcccattggaagtgtgaaaaatgctgcaaaatttggt
ctggctgctgcagcaacaaaggcaaaactatttgctgaacatgaagaacgtgagattcag
agaatggctgctacaattataaaccaccaattaaagagactagagctgaagctgaaccag
ttttctgaggtggacaccttgttaatgaaagaatgtgaacagatggaaaggacaaggcag
aggattgtggctgaacgagccagaattatctcaactcgttttggacctgctggaacatct
aacactaccctaccaggtgctgctgctgtggcaagtagtagtgctgttaacaacaggcct
caacttatatcagcatcacctgcactgacaaatatctcagcttatggaaataaccaagca
agccatccacatatgtctttcatgccacggccacaaatgtttgcatatggaccacggtta
cccctctctgccattcatccctcttcgtctgccccatccagtagtgtcatgtttacttcc
ccgggaaatgtcgctcacccgagtcttaatcatcccttgctaagacctgtatctgggact
aacacaaatgtaggttga
DBGET
integrated database retrieval system
