KEGG   Telopea speciosissima (New South Wales waratah): 122656836
Entry
122656836         CDS       T07910                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03022  Basal transcription factors
tss03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    122656836
  09124 Replication and repair
   03420 Nucleotide excision repair
    122656836
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tss03021]
    122656836
   03400 DNA repair and recombination proteins [BR:tss03400]
    122656836
Transcription machinery [BR:tss03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     122656836
DNA repair and recombination proteins [BR:tss03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     122656836
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 122656836
NCBI-ProteinID: XP_043707435
LinkDB
Position
3:24425514..24454668
AA seq 303 aa
MASIPSKLYSDDVSLLVLLLDTNPFLWTGANTTTTSLPFPSFLNHVLSFLNSILLLNQLN
QVVVIATGVNSCDYIYDSSSSLPTTADSSENGRMPMLCSRLLSKLEEFVIEDERLSKDES
PEGIVSSLLSGSLSLALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQR
SMVPIDSCVIGAQHSAFLQQASYITGGVYLKPQLPDGLFQYLSTVFATDLLSRNFLRLPK
PVGVDFRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQALGDTTSTDRKRKT
PET
NT seq 912 nt   +upstreamnt  +downstreamnt
atggcatctattccatcaaagttatattcagatgatgttagccttctcgtgcttttactt
gacactaatcctttcctatggactggagcaaacaccactaccacctctctccccttcccc
agtttccttaatcatgtcctctctttcctgaactccattctcctcctcaatcaactcaac
caagtcgtggttattgccaccggagtcaattcttgtgactacatttatgactcttcttcc
tctctaccaacaacagctgatagttcagaaaatgggagaatgcccatgctttgctcaaga
ctactgtcaaaattagaggaatttgtgattgaggatgaacggttgagcaaagacgagtcg
ccagaagggattgtatcttctcttctatcaggatcattgtctctggctctttgctatata
cagagggtgtttcgttctggaccgctccatccccagcctagaattttgtgcctgcaggga
tccccagatggacctgaacaatatgttgcagtaatgaatgcaattttctcagcccaacga
tccatggttcctattgattcatgtgttataggagcccagcattctgcctttttgcaacag
gcttcttacattacagggggtgtgtatctgaagcctcaactaccagatgggctatttcag
tatctttcgacggtatttgcaactgatttattgtctcgaaacttcttacgacttcctaag
cctgtaggggtggattttcgtgcctcgtgtttttgtcataaaaagaccattgacatgggc
tacatatgctcggtttgcttgtccatattctgcaagcatcacaagaaatgttcgacctgt
gggtctgtttttggtcaggcccttggtgacactacttcaacagaccggaaaaggaagact
ccagaaacatga

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