KEGG   Telopea speciosissima (New South Wales waratah): 122656845
Entry
122656845         CDS       T07910                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03082  ATP-dependent chromatin remodeling
tss03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122656845
   03083 Polycomb repressive complex
    122656845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tss03036]
    122656845
Enzymes [BR:tss01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     122656845
Chromosome and associated proteins [BR:tss03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     122656845
   HDAC complexes
    Sin3A-HDAC complex
     122656845
    BRAF-HDAC complex
     122656845
    REST complex
     122656845
    SHIP complex
     122656845
    MiDAC complex
     122656845
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     122656845
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122656845
  Chromatin remodeling factors
   NuRD complex
    122656845
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 122656845
NCBI-ProteinID: XP_043707446
LinkDB
Position
3:6117044..6123198
AA seq 472 aa
MEETSGASLPSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRLM
EINRPFPAGSDDIRRFHSDDYVEFLSSVTPETLHDHTHSRHLKRFNVGEDCPVFDGLFPF
CQSSAGGSIGAAVKLNRGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRR
VLYVDIDVHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHLKDIGVGTGKYYALNVPLN
DGMDDDSFRGLFRPIIQKVMEVYQPDAAVLQCGADSLSGDRLGCFNLSVKGHADCLRFLR
SFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDYTLHVEPSS
MENQNSPKDLEKMRTVLLEQLSRIMHAPSVQFQARPPDTQVPDEGEEDMDQRPKPRIWGG
EDVGSESEEDEKPRHDDYNVVDQSLADIGTREIKEEIKEEKEVKEENQSTLC
NT seq 1419 nt   +upstreamnt  +downstreamnt
atggaggagacctcaggagcgtcgctgccatcagggccggatggtaagaagaggagagtg
agctacttctacgagccgacaataggggactactactacggtcagggccacccgatgaag
ccccacaggatccgaatggcccacaacctcatcgtccattactcccttcaccgtctgatg
gagatcaaccgtcccttccctgccggctccgacgacattcgacgtttccattccgacgac
tacgtcgaatttctctcctccgtcacacccgagacccttcacgaccacacccactcacgc
cacctcaagcgcttcaatgttggtgaggactgccctgtcttcgacggccttttccccttc
tgccagtcctccgccggtggttccattggcgccgccgtcaagctcaatcgcggcgacgca
gacatcgccctcaattgggccggcggattgcatcacgccaagaagagcgaagcctctggc
ttctgttatgtcaacgacatcgtgcttggcattctcgagcttcttaaggtccataggcgc
gtgttgtacgtagatattgacgtccaccatggagacggagttgaggaggcatttttcacg
acagacagagtcatgactgtttctttccataaatttggggacttttttcctggaacagga
catctgaaggacataggagtcgggactgggaagtactatgctcttaacgtccctctaaat
gatggaatggatgatgatagtttccggggcctgtttcggcctatcattcagaaagtcatg
gaggtttatcaaccagatgcagcagttctccaatgtggggctgattccttgtcaggggac
aggttggggtgcttcaacttgtcagtgaagggccacgctgactgccttcgtttccttaga
tccttcaatgttcccttgatggtcttgggtgggggaggttatacaatccgtaacgttgct
cgttgctggtgttatgagacagctgttgccgttggggtggaacctgaaaataaactacct
tataacgaatactatgaatactttggccctgattatactcttcatgttgaaccaagcagc
atggagaatcaaaactcaccaaaagatttggagaaaatgaggactgtgctgttagaacaa
ctttcaagaataatgcatgctcctagtgtacaatttcaagcacggccacctgacactcaa
gttccagatgagggagaggaggacatggatcaaagaccaaaacctcgcatttggggtggt
gaagatgttgggtctgaatcggaggaggatgaaaagcctcgacatgatgactataatgta
gttgatcaatctctggcagacatcggcaccagagaaattaaagaagaaataaaagaggaa
aaagaagtcaaagaagaaaatcaatccaccctctgctga

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