Telopea speciosissima (New South Wales waratah): 122657442
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Entry
122657442 CDS
T07910
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03430
Mismatch repair
tss03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122657442
03460 Fanconi anemia pathway
122657442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tss03400
]
122657442
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
122657442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
122657442
NCBI-ProteinID:
XP_043708080
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Position
4:complement(70019345..70036778)
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AA seq
919 aa
AA seq
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MEGAAVNSAAIKPINKGVVHRICSGQVILDLSSAVKELVENSLDAGATSIEITLKDYGEE
SFKVIDNGCGIAPSNFKVLALKHHTSKINDFPDLQSLTTFGFRGEALSSLCALGNLTVET
RTKNEPVATHLTFDRSGLLISERKVARQIGTTVTVDKLFSTLPVRSKEFSRNIRKEYGKL
ISLLNAYALIAKGVRLVCTNTTGKSTKSVVLNTQGSSSIRDNIITVFGMKTFSCLEPLSI
QISESCMIEGFLSKPDHGSGRNLGDRQFFFVNGRPVDMPKVSKLLNELYKSSNSKRYPIV
VMNFTVPTRAYDVNVTPDKRKIFFSDEGSLVHSLREAIEKIYSSNHCSYSINKFEEPKQE
VGNNESHMSLQEISPEGYSCKDVACCEREIMEEETTENDIPVKVVKKDIHESYKRSGMVH
IKDQSPVEKDFSLRVHAVEKGDSSGNCNMPLRTEPHFSVDKHIPSPLRAVGKDSVENLCS
SSRSGIIQSSLMKFVTVNKRKHGDSSTKLSEVPVLRNEPSRCQVRKSHSEMHASSSRSLA
SPPKIDDSGEIFENEPSKYHEESIVCDEVQTPVSSRGGVYILGSGGEDLKDQEKVLPLDV
AANVLSGDGLESISEDLPDTVSVLQSSHVVLDTPVASSGLEICSTLHFSVEDLKTRRKQQ
SRMKSSGLAEESTRIKSSRCYAAATVELSQPENDERKARALSAATTELERFFNKKDFSRM
KVIGQFNLGFIIGRIDEDLFIVDQHAADEKHNFERLSQSTILNQQPLLQPMRLELSPEEE
VVASMHMDIIRKNGFTLEEDVHAPPGCQFKLKAVPFSKNITFGAEDFKELISTLADSQGE
CSMISSYKMDTSDSLCPSRVRAMLASRACRSSVMIGDPLGRNEMKKILEHLSGLKSPWNC
PHGRPTMRHLIDLTTIRKR
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggagggagcggcagttaattctgcagccattaagcctataaataagggtgtagttcat
aggatctgctcaggacaagtaattctagatctctcttcggcagtgaaggagttggttgag
aacagcttggatgccggtgctactagtattgagattactttgaaagattacggtgaagaa
tcattcaaggttatcgataatggttgtggcattgcacccagtaattttaaggtacttgca
ctcaagcatcatacctctaaaataaatgattttcctgatctccagtcattgacgactttt
ggtttcagaggggaggcactcagctctctttgtgcactagggaatttaactgtcgagaca
agaacgaaaaatgaaccagtagccacacacttgaccttcgaccgttcaggtctattaata
tctgaaaggaaagtagcacgccaaattggtaccactgtcactgttgataaattattttcc
actttgccagtgcggagcaaggaatttagtcgcaatatccgtaaagaatatggaaagctt
atttcgctattgaatgcatatgctctcattgctaaaggagttcgattagtctgcaccaac
acaactggaaagagcacaaaatcagtagtgcttaatactcaagggagcagttctattaga
gataacattataacagtatttggcatgaagaccttctcatgtttagagcctttgagtata
caaatatcagagagttgcatgattgagggctttctttccaagcctgatcatggcagtgga
cgtaacttgggagataggcaattcttttttgtcaatggccgaccagtggatatgcctaaa
gtcagcaagcttttgaatgaattatataagagttcaaactctaagcgatatcccattgta
gtcatgaactttactgtcccaactagagcatatgatgttaatgtaactcctgataagagg
aaaatattcttttctgatgagggatctcttgtgcactctttaagagaggctatagaaaag
atatattcctcaaatcattgcagttattctattaacaaattcgaggagcctaagcaggaa
gtgggaaataatgagtcacatatgtcactgcaagaaatatctccagaaggttacagctgt
aaggatgtagcatgttgtgagagagaaattatggaagaagaaactacggagaatgatatc
cctgttaaagttgtaaaaaaggatattcatgagtcttataaaagatcaggaatggtccac
attaaggaccaaagtccggtagagaaggacttctctcttagagtgcatgctgttgaaaag
ggtgatagttctggcaattgtaatatgccattaagaactgaacctcatttttctgttgat
aaacacattccatctcctctaagagctgtagggaaagattctgttgaaaatttatgttca
tctagtcgctcaggcattattcaatcatcacttatgaagtttgttactgtgaataagagg
aagcatggagatagtagcacaaaattgtctgaagtgcctgttctaagaaatgaaccaagt
cgctgtcaagtaagaaaaagccattctgagatgcatgcctcatcttcaagatccctggct
agtccccccaagatcgatgattctggtgagatctttgagaatgagccttctaagtatcat
gaagaatctattgtttgtgatgaagtacaaactccagtttcttctagaggtggtgtttac
attttaggatctggaggggaggatttaaaagatcaagaaaaagtattacctcttgatgtg
gctgcaaatgtgttgtctggtgatggtcttgaaagtatatcagaggaccttccagacaca
gtgtcagtgttacagtcttctcatgtagtattggatactccagtggcttcttctggttta
gagatatgttctactttgcattttagtgtcgaagatctaaaaacaaggaggaaacagcag
tcaagaatgaaatccagtggtttagcagaggaaagcacaaggattaagagttctaggtgc
tatgctgcggcaacagtggagctttctcaaccagaaaatgatgagcgaaaagcaagggct
ctatctgccgcaactacagagttggaaaggttcttcaataaaaaggattttagtagaatg
aaggttattgggcagttcaatcttggttttatcattggaaggatagatgaagacctattt
attgtagatcagcatgctgcagatgagaaacacaatttcgagcgactgtcacagtcaacc
atcttgaaccaacagcctttactgcagccaatgagattggagctatctccggaagaagaa
gttgtagcttcaatgcatatggatataatcaggaaaaatggatttactttggaagaggat
gtacatgctcctcctggctgccaatttaaattaaaagctgtgcccttcagtaaaaacata
acttttggagctgaagattttaaggagctcatatctacccttgctgatagtcaaggggag
tgctcgatgattagtagttacaaaatggacacttcagattctctttgtccatcaagggtt
cgtgctatgctggcatcgcgtgcttgccgttcatctgttatgattggagatccgctgggg
cgaaatgagatgaaaaagatacttgagcatttgtctggcctcaagtctccttggaattgc
ccacatggtaggccaaccatgcggcacttgatagacctgacgactatacggaagaggtaa
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