Telopea speciosissima (New South Wales waratah): 122658052
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Entry
122658052 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122658052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122658052
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122658052
Spliceosome [BR:
tss03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122658052
Complex B
122658052
Complex C
U2 SnRNP specific factors
122658052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122658052
NCBI-ProteinID:
XP_043708851
LinkDB
All DBs
Position
4:complement(66492750..66499664)
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AA seq
777 aa
AA seq
DB search
MSKRKFGFEGFGINRPGTYNFEQSQAPQRLYVPPSSRSSGHDNFEDHDVDNIEYDDTDGT
NDASKDETGGAGDDDGEIDPLDAFMEGIQEEMRSAPPPKAKDKPEKYMDDEEDDPMESFL
RAKKDVGLTLASEVLNAGYDSDEEVYAAAKAVDAGMIEYDSDDNPVIVDKKKIEPIPALD
HSSIEYEAFNKDFYKEKSSISGMSEQDVAEYRKSLAIRVSGFDVPRPVKSFDDCGFSSQL
MSAITKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIMHIMDQPELEKE
EGPIGVICAPTRELAHQIYLESKKFAKSHGIRVFAIYGGMSKLEQFKELKAGCEIVVATP
GRLIDMLRMKAVTMFRSTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPHK
VEKLAREILSDPVRVTVGEVGMANEDITQVVQVIPSDAEKIPWLLEKLPGMIDNGDVLVF
ASKKATVDEVESQLLQKGFKVSALHGDKDQASRMDILQKFKSGIYHILVATDVAARGLDI
KSIKSVVNFDIARDMDMHVHRIGRTGRAGEKDGTAYTLITQKEARFAGELVNSLIAAGQN
VSMELMDLAMKDGRFRSKRDARKGSGGKKARGRGKGGGGSGRGVRGVDYGLGIGYDAESV
NTSSQSAHSRSAAVNSLRTGMMAQFRSNFVAASSDSQNHGANSNPTAYANKKPVLHGFVS
GGSIGGDLNRTQPASSLDPAPTFAKASENSRENGSQKISESSRDRPRERRRQSGWDR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaaattcggcttcgaaggattcggaatcaataggccaggaacctacaat
ttcgagcaatcccaagctccgcagagactgtatgttcctccatcgtcacgctcatctggt
catgacaattttgaagatcacgatgttgacaatattgaatatgatgacacagatgggact
aacgatgcttctaaggatgaaactggaggtgctggtgatgacgatggggagattgatcct
ctcgatgcattcatggagggaatccaagaggaaatgaggtcagcacctcctcccaaggcg
aaagataagccagagaagtacatggatgacgaagaggatgatccgatggagagcttcttg
agggcaaagaaggatgtggggttgactctcgcttcggaagtccttaatgctggttatgat
tcggatgaggaggtttatgcagcagctaaagcggttgatgctgggatgattgagtatgat
tcagatgataatcctgtgatcgtcgataagaagaagatcgagccgattccggccttggat
catagttccattgagtacgaggcatttaacaaggacttttacaaagagaaatcttccatt
tcagggatgagtgaacaggatgttgctgaatatcggaaaagtttggctatacgtgtttca
ggttttgatgtaccaagacctgttaagtcattcgatgactgtggattttcatcccagcta
atgagtgctatcacaaagcaagggtatgagaagccaacaccaatacagtgtcaggctttg
ccaattgtgctttccgggagagatatcataggtattgcaaaaaccggttctggaaaaact
gctgcttttgtacttcctatgattatgcacattatggaccagcctgaacttgaaaaggaa
gagggtccgataggagtgatatgtgcacctaccagagaattagctcatcaaatatattta
gagtccaagaaatttgcaaagtctcatggaatacgtgtttttgctatttatggtggaatg
tctaaacttgaacaatttaaggaacttaaggcaggttgtgagatagttgttgccactcct
gggagattgattgacatgctgaggatgaaagcagtaacaatgtttagatcaacttacctt
gttcttgatgaggctgatcggatgtttgaccttggttttgagccacagataaggtctatt
gttggtcagattagacctgatcgtcagaccttacttttttcagcaactatgccgcacaaa
gttgaaaagttagctagggaaattctcagtgatcctgtaagggttacagtaggtgaggtg
ggaatggcaaatgaagatattacgcaagttgtccaagtaattccttctgatgctgagaag
ataccttggcttcttgaaaaacttcctgggatgatcgacaatggagatgttctagtgttt
gcttcaaaaaaggctacagttgatgaggttgaatcacaattgcttcagaaagggtttaaa
gtttcagctcttcatggtgataaagatcaggcttctcgaatggacattttacaaaaattt
aaatctgggatataccatatcctggttgcaactgatgttgctgctcgtggacttgacatc
aagtcaattaagtcagttgtaaattttgatattgcaagagatatggacatgcatgtccat
cgtattggtagaacaggtcgtgctggagagaaggatgggactgcatacactcttatcaca
cagaaagaggcacgctttgctggtgagttggtaaacagtttgattgctgctggccagaat
gtctccatggagctgatggatctagctatgaaagatgggagattcaggtcgaaacgcgat
gcaaggaaaggatctggtgggaaaaaagcaagagggaggggaaagggaggtggtggcagt
gggcgaggggtgcgtggtgtggattatggcttgggcattggatatgatgcagaatcggta
aatacatcttctcagtcagctcatagtcgatctgctgctgttaattcactgagaacaggg
atgatggcacagttcagaagcaattttgtagctgcatcatctgattctcagaaccatggt
gcaaatagcaatcccactgcatatgcaaacaagaagccagtactacatggttttgtttca
ggtggttcaatagggggagacttaaatagaacacagccagcaagttcattggatcccgct
ccaacatttgcaaaagcttctgaaaattccagagaaaatggaagtcagaaaatttctgaa
agctctagagataggccaagggaaaggcgaaggcaatctggttgggatcgataa
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