Telopea speciosissima (New South Wales waratah): 122658492
Help
Entry
122658492 CDS
T07910
Name
(RefSeq) THO complex subunit 5B-like
KO
K13174
THO complex subunit 5
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122658492
09122 Translation
03013 Nucleocytoplasmic transport
122658492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122658492
03041 Spliceosome [BR:
tss03041
]
122658492
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122658492
Spliceosome [BR:
tss03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122658492
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
122658492
NCBI-ProteinID:
XP_043709413
LinkDB
All DBs
Position
4:complement(19015826..19029526)
Genome browser
AA seq
811 aa
AA seq
DB search
MEEEMAEALPARKMEKKAYEQLEESRTSMEEIVAKMLFVKKEGKPKSELRELVTQMSLHF
VNLRQINRSILLEEDRVKAETERAKPPVDFTTLQLHNLLYEKNHYLKAIKACKDFKSKHP
DIELVPEEEFFSSGPEDIKGTVMSNDSSHNLMLQRLNFELFQRKELCKLHEKLEQHKKNL
LETIANRKKFLSSLPSHLKSLKKASLPVQHQLGVLHTKKLKQHHSAELLPPPLYVIYSQL
LAQKEAFGENVDMEIVGSMKDAQAFAHQQATKDAGTSTNTDTYRLEDDAPDEDDDGQRRR
KRPKKVPGRESLEQAGIYQSHPLKIILHIYDEEVSESKPSKLISLKFEYLLKLNVVCVGI
EGSHEGPETNILCNLFPNDAGIELPHQSAKLIAGDAVTFDEKRISCPYTWAQHLAGIDFL
PEASPLLTSSEIPSSETVKSASVISGLSLYRQQNRVHTVVQRIRSRKKAQMALAVQLDFL
MKLKWPPLTYENVPWASHNPLCNLQSWSSVGPSPHQVSSLPAVALEQVAEPLDLDTEGRS
GTLREEMESAREDGELPAVVQVPTIINDTKLPDAKTPVSKVTDVEHSRRLILLSKSVVPT
FKKTKSLSFQKIDEDLELTLDDESDLDEASQFEREPESAANIGCHKMVSWEDYGVKEFCL
VLNRKIGKTERAINLEAKVKISMEYPLRPPVFTLALYSALPGESSYERNDSEWFNELRAM
EAEVNLHILKMLPCDYENNILAHQVCCLVMLFDFFMDEESPCSQTRKGTSVVDVGLCKPV
SGTMLSRSFRGRDRRKMVSWKDAQCTLGYPC
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaaatggcggaagcgttaccggctcgaaagatggaaaagaaggcgtacgaa
cagctggaagagagtcgaacttcaatggaggagatcgtagcgaagatgctgtttgtaaag
aaggaagggaaacctaaatcggaactcagggagctcgtcactcagatgtctctccacttt
gtcaatcttcgtcagataaatcgttccatcttgctagaagaagatcgtgtaaaagcggaa
acagaacgtgccaaaccacctgtagactttactaccctgcagcttcacaacttgttatat
gaaaaaaatcactatttgaaggccataaaggcttgcaaagatttcaagtcgaagcatcca
gatattgaacttgtacccgaggaagagtttttcagtagtgggcctgaagatattaaagga
actgtgatgtcaaatgacagttctcataatctcatgctacagaggctcaatttcgagctt
tttcagcgaaaagaactctgcaaacttcatgagaaactggagcagcacaagaaaaatctt
ctggagaccattgcaaatcgcaagaagttcttgtcaagtctcccttcacacttgaagtct
cttaagaaagcatccttgccagtgcagcatcagcttggtgtcctgcatacaaagaaattg
aagcagcaccattcggcagaattacttccacctcctctctatgtgatttactcccagtta
ttggctcagaaggaagcttttggagagaacgttgatatggagatagtaggaagtatgaag
gatgctcaggcttttgcccaccagcaggcaactaaggatgctggcacttcaacgaacaca
gacacctataggttggaagatgatgcacctgatgaggatgatgatggccagagaagaaga
aagagaccgaagaaggttcctggcagggagagcctggaacaagctggaatctatcaatcc
catcctcttaaaatcatcctccatatatacgatgaggaggtttccgaatccaagccatca
aaactgatcagtcttaagtttgaatacttgctgaagttgaatgttgtatgtgttgggatt
gaagggtcccatgaaggaccagagacaaacatcttatgtaacttattccccaatgacgct
ggcattgagcttcctcaccagtctgctaagctcattgctggtgatgctgttacatttgat
gaaaagaggatctcttgtccatatacatgggcccaacatttggcaggaattgatttcttg
ccagaggcttctcctctgcttactagctccgaaattccaagcagtgaaacagttaaaagt
gcttcagttatttctggcctgtctctttaccgccagcagaatcgggtacatacagttgtg
cagagaattcgctctcggaaaaaggctcagatggctcttgcggtacagcttgatttttta
atgaagcttaaatggcctccattgacttatgaaaatgttccgtgggcctcgcataatcct
ttgtgcaatttgcaaagctggtcatctgtggggccctcacctcatcaggtttcttctttg
cctgctgttgctctggaacaagttgcagagcctttggaccttgataccgagggaagatct
ggcacactgagggaagagatggagagtgcaagggaagatggggaattaccagctgttgtt
caggttccaaccatcataaatgacactaagctcccagatgctaagacccctgtatcaaaa
gtgactgatgttgagcattctagacgcctgattttgctttccaagagtgttgttcctact
tttaaaaaaacaaaatctcttagtttccagaaaattgacgaggatttagaactcaccctg
gatgatgagagtgatctggatgaggcttcacagtttgagcgagagccagaaagtgcagct
aatattggatgccataagatggtttcatgggaggactatggagtaaaagagttctgcttg
gttttaaacaggaaaataggaaaaactgagagggctataaatttagaagccaaggtcaag
atcagcatggaatatcctctaaggcctcctgtttttactcttgcattgtatagtgctctt
ccaggagaaagttcttatgagaggaatgattctgaatggttcaatgaactccgtgccatg
gaggcagaggtcaatcttcacattcttaagatgctgccttgtgattatgaaaacaacatc
ttggctcatcaagtgtgttgtcttgtgatgctgtttgacttcttcatggatgaggaatcc
ccatgttctcaaacgaggaagggtacttcagtggttgatgttggtttgtgcaagccagtt
agtggaacaatgctttctagatcttttagaggaagagatagaaggaagatggtctcttgg
aaagacgcacaatgcactcttggctatccttgttag
DBGET
integrated database retrieval system
