KEGG   Telopea speciosissima (New South Wales waratah): 122659731
Entry
122659731         CDS       T07910                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03030  DNA replication
tss03410  Base excision repair
tss03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122659731
   03410 Base excision repair
    122659731
   03420 Nucleotide excision repair
    122659731
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tss03032]
    122659731
   03400 DNA repair and recombination proteins [BR:tss03400]
    122659731
Enzymes [BR:tss01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     122659731
DNA replication proteins [BR:tss03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    122659731
DNA repair and recombination proteins [BR:tss03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      122659731
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 DNA_pol_B zf-DPOE DNA_pol_B_exo2 RNase_H_2 CooC_C
Other DBs
NCBI-GeneID: 122659731
NCBI-ProteinID: XP_043710780
LinkDB
Position
1:23426722..23511457
AA seq 2223 aa
MNGEGRRRERRDSRKKQNHIRNAEEELESKLGFDLFSEGEKRLGWLLTFASSSCEDQDTN
KTYSCIDLYFVTQDGSTFKSKYKFPPYFYAATKEKMEIDVEAYLRRRYEGQIADIEIMEK
EDLDLKNHLSGFRNSYLKISFDTVQQLMHVKNDLLHVVERNQAKIDATEAYESILSGKSK
QRPQDFIDCIIDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSNGVVLEKRSDLLQRAEVH
VCAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIEDLEYTPKPEYEG
YFKVKNVKNEEELIRQWFVHMREVKPGIYVTYNGDFFDWPFLEARAARHGIIMSNELGFQ
CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAM
ERPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQA
YKANVICPNKHQDDPEKFYNNHLLESETYIGGHVECLESGVFRSDLPTKFRLDPSAYELL
ISNLDRDLQYAIKVEGKMDIESVSNYDEVKNAIMEKLVRLLGDPIREECPLIYHLDVAAM
YPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRTLEWVWRGETFMAKKSDYYHLKRQI
ESEFIETGNGQLPKSFLDLPKSDQQSRLKERLKKYCQKAYKRVLDKPITELREAGICMRE
NSFYVDTVRSFRDRRYEYKGLNKVWKGKLADAKASGNPIKIQEAQDMVVLYDSLQLAHKC
ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWCALPG
SFPENFTFKTKDLKRKLTISYPCVMLNVDVARNNTNDQYQTLKDPIHKTYETHSECSIEF
EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEVFD
KFLHGGTLEECYAAVASVANRWLDLLDSQGSDIADSELLDYISESSTMSKSLVDYGVQKS
CAVTTAKRLADFLGDAMVKDKGLRCQYIVARDPQGTPVSERAIPVAIFETNAEIAKFYVR
KWCKISSDVGIRSIVDWSYYKQRLSSTIQKIITIPAAMQKVSNPVPRVIHPDWLHKKVRE
KNDKFRQRKLNDIFSPLNKDNTKQGDFPALTSSHALDSVNVEDIEDLNRSSTMIGPRPTV
RNYDVNKEKHLAKTSCTLISLQQQQTDATKGMFHQDVMSAKNIDKNVDYQGWLEVKKRKW
KDTREERKRQRGSVKRVCKNNDISELSGAEISHKQGQGRGQFNSFFRRPELALLHSYWQI
IQLIPSSQPGQFFAWVVVEGIMLKVPINIPKIFYLNSKAPITEEFPGRRVNKILPHGRPC
FNLIEVIIDEDEFRAGSKKLAAHLADPEVEGIYETKVPLEFNAILQIGCVCRVDKAVKNR
NSQSIWNLSELHMKTTTECPYLEQQISFIYLYHSLSEGRAIYIAYFPISGTLSVVVVNPF
QNRDLSPSILEKQFREACQAFSSDPSHGNNIVFKVDYVGHAKDAEKILHRTINEYRHQHH
GPAVAVIECPNIHSMKTGIHVLDEFPCVNIPCNARDSHYQALGWQIVAAKIGMQRCAASS
HWLNERISLSRYAHVPLGNFELDWLLFTADIFYSRALHDHQQVLWISNDGIPDLGGIVED
DTCFADEVHQPVLTFPGAYRKVAVELKIHHLAVNALLKSNQVNEMEGGALFGFDQEMNPG
AKIINEQTIFDETSSCAPAFRVLKQLIQRCLADAVKSGNVFADAILQHLYRWLCSPQSKL
HDPALHRVLHKVMQKVFALLLAEFRKLGATIIFADFSKVIIDTGKTDLPAAQAYCDSLLK
TLQTRDLFEWIELEPLHFWHSLLFMDQYNYGGIQAKSHGGNSVNISKPPNEAEEDDCLVE
IVSSWNIAEYLPKETQDHFVLIVSEFMYKPWKFAQKLTENRASSMDGNQCTPSITIATAE
TLELHVTKFLKEQISSYFTDKLLRIVRDIVLHVKGLNKSENDDTSHGSPHIAGSKIHKGD
AALEFIKHVCAVLALDRNVQHDILVMRKNLLKYVRVREFAPEAEFHDPCLSFTLPNVICS
YCNDCRDLDLCRDSVLLAQELRCAVPQCGQPYDHEAMENALLQIVRQRERLYHIQDLVCL
KCSQVKAAHLAEQCTCGSSFRCNEDASEFHRKMQVFLNIAIHQKFELLHECMLWILQINL
LQT
NT seq 6672 nt   +upstreamnt  +downstreamnt
atgaacggcgaaggtagacgtagagagcgcagagattcgagaaagaaacaaaatcatatc
cgcaacgccgaggaggaactcgaatccaagctagggtttgatctattttctgaaggcgaa
aagaggctgggatggttgctcacttttgcatcttcatcttgtgaggatcaagacacaaac
aagacatatagttgtatcgatctgtactttgttacgcaggatggctctactttcaaatcc
aagtacaagtttcccccttatttctatgccgccacgaaggaaaagatggaaatagatgtt
gaggcatatctgaggcgacgatacgaaggacagattgctgatatagaaattatggagaaa
gaagatcttgatcttaaaaaccatttgtctggtttccgcaattcttatttgaagatatcc
ttcgatacggtccaacaactgatgcatgtgaagaatgatctgctgcatgttgttgaaaga
aaccaggcaaagattgatgctacagaggcatatgaatctatattaagcggcaaaagcaag
caaagacctcaggactttatagactgcatcattgatctccgagagtatgacgttccttat
cacgttcgctttgccattgataatgatgtaaggtgtgggcagtggtacgatgttagcgta
tctagtaatggtgttgttctggagaagaggagtgatcttctacaacgtgctgaagttcat
gtttgtgcatttgatattgagacaacaaaacttcctttgaaatttccagatgctgaatat
gatatgataatgatgatatcttacatggtggatggacaaggatatcttataattaacaga
gagtgcgtgggggaggacatagaagatctggagtacacaccaaaaccagaatatgaaggg
tatttcaaagtgaaaaatgtgaaaaacgaggaagagctcattagacagtggtttgttcat
atgcgagaggtgaaacctggtatatatgtcacatacaatggtgatttctttgactggcca
ttcctggaagctagagcagctcgtcatggaattataatgagcaatgagctggggtttcaa
tgtgacaagaatcagggggaatgtcgtgctaaatttgcttgccatctggattgttttgct
tgggtgaaacgtgatagctatcttcctcaagggagccatggtttaaaggctgttacgaag
gctaagttgggatatgacccacttgaggtgaatcctgaggatatggtacgctttgccatg
gaacgtccccagaccatggcttcttattcagtatcagatgctgttgcaacttactacctg
tatatgacctatgttcatcctttcattttctctcttgcgactataatacctatgccgcct
gacgaggttttacgcaaaggaagtggaaccctttgtgaaatgctcctcatggtccaggca
tacaaggcaaatgttatctgtcctaataagcaccaagatgatccggagaagttctataat
aaccaccttttggagagtgagacgtatataggtggtcatgtggagtgcctcgaaagtggt
gtttttagatctgatcttcctactaagtttcgtcttgatccatctgcatatgagctatta
atcagtaaccttgatcgtgatctgcaatatgcaataaaggtggagggtaagatggacatt
gaatctgtctccaattatgatgaagtgaaaaatgctatcatggaaaagcttgtaaggttg
ctgggtgatcctattcgtgaggaatgtcctctgatatatcatctagatgttgctgcaatg
tatccaaatattattttaacaaaccggcttcagccgccttcaatagtttcagatgaggtc
tgcactgcatgtgattttaatcgtccgggaaaaacttgtcttcgaacgctcgagtgggtt
tggcgtggagagactttcatggcaaagaaaagtgactattatcatttgaaaaggcaaatt
gaatctgagttcattgaaactggcaatggtcagttgccaaaatctttccttgacctgcct
aaatcagatcaacaatcaaggctgaaagagcgtcttaaaaaatattgccaaaaggcatat
aagagggtccttgacaagccaatcactgaactaagagaagctgggatatgcatgagggaa
aattcattctatgttgacactgttcgcagtttcagagatagaaggtatgaatataaagga
ctaaacaaagtctggaaggggaagttggcagatgccaaagccagtggaaatcctataaag
atccaggaggcacaagatatggtggttctctatgattctttgcagcttgctcataaatgt
atacttaattccttctatggatatgtcatgcgcaagggtgctagatggtattcgatggaa
atggctggagtagtcacttatacgggtgcaaaaataattcagaatgctcgcttactggtt
gaaaaaattggaagaccactagaattggacacagatggaatttggtgtgcgcttcctgga
tcttttcctgagaactttaccttcaaaacaaaagacttgaaaagaaaattgacgatctca
tacccttgcgttatgcttaatgttgatgtggcaagaaacaatacaaacgatcaataccag
acactcaaagatcctattcataagacatatgaaacacatagcgaatgctccattgagttt
gaggtggatggaccatacaaggcaatgatacttcctgcttcaaaggaagagggcatttta
attaagaagagatatgctgtttttaatgatgatggaacccttgcagagcttaaaggtttt
gaaatcaagcgtaggggtgagctgaagctcattaaagttttccaggctgaggtttttgac
aagtttctccatggaggaaccttggaagaatgctatgctgcagttgcttctgttgcaaac
cgctggcttgatcttctcgatagtcaaggtagtgatattgctgatagcgagttgcttgat
tatatttctgagtcaagtaccatgagtaaatccttggttgactatggagtgcaaaaatcc
tgtgctgtgactactgcaaaacgacttgctgattttcttggtgatgcaatggttaaagac
aagggtctacgttgtcaatatatagttgcacgcgacccacagggcactccagtaagtgag
cgtgctattcctgttgctatatttgagactaatgctgaaattgcaaagttctatgtgcgg
aagtggtgcaagatttcatcagatgtcggcattcgatccattgtcgattggtcctattac
aagcaacggctttcttcaacaatccagaaaataattacaatacctgcagcaatgcaaaag
gtttctaaccctgtcccaagagtaattcatcctgattggctgcataaaaaggtccgtgag
aagaacgacaaatttcgccaacgcaagctaaatgatattttcagcccgttgaacaaagat
aataccaagcaaggggattttcctgctcttacctctagtcatgcattggatagtgtaaat
gttgaagatatagaagatttaaacagaagttctaccatgattggacctcgacctactgtt
cgtaactatgacgttaacaaagaaaaacatttagctaagacatcttgcaccttaatttct
ttgcaacaacaacaaactgatgctacaaaggggatgtttcatcaagatgttatgtctgct
aaaaatatcgacaaaaatgttgattaccaagggtggcttgaagtaaagaagagaaaatgg
aaagatactcgagaggaaagaaagaggcaaaggggcagtgtaaagagagtatgcaaaaat
aatgatatttctgagttgtctggtgctgagataagccacaaacaaggccaaggcagaggc
cagttcaattcatttttccggaggcctgagttagcgcttttgcactcgtactggcagata
atacagctcattccaagttcacaacctggacaattttttgcatgggttgttgttgaagga
atcatgcttaaggttcctataaatatacccaaaatattttacctcaattctaaagcaccg
attactgaagaatttcctggtaggcgtgtcaacaaaattcttcctcatggacgtccttgc
ttcaatctcattgaggtaataattgatgaagatgaatttagggctggaagtaagaaactt
gctgcacaccttgctgatccagaagtagaggggatttatgagacaaaggtgccactggaa
tttaatgccatcctccagattggttgtgtctgtagagtggataaagcagttaagaatcga
aattctcaaagcatttggaacctgagtgaactgcatatgaagaccactacagagtgtcct
tatctggagcaacaaatctctttcatttatctatatcatagcttgtctgagggacgggca
atatatattgcatattttcctatatctggtacgctatccgttgtggtggttaatcctttt
cagaatagagatttgtccccgtctattcttgaaaagcaattccgcgaagcttgccaagcc
ttttcctctgacccttctcatgggaataatatcgtttttaaggtggactatgtggggcat
gctaaagatgctgaaaagattttgcataggacaataaacgagtacaggcatcaacaccat
ggacctgcagttgctgtcattgaatgcccaaacatccattcaatgaagacaggcatccat
gttctggatgaattcccttgtgtaaacatcccctgcaatgcacgcgatagccactatcag
gctcttggatggcaaattgtggctgcgaaaattggaatgcaacgatgtgctgcatcatca
cactggttgaatgagaggatttctctttcaagatatgcgcatgtacctttgggaaatttc
gaacttgactggcttctttttacagcagatatcttctactctagagcattgcatgatcat
caacaggttctttggatatcgaatgacggcatcccagatcttggtggcattgttgaagat
gatacatgctttgctgatgaagtccaccagcctgtccttacttttcctggggcatataga
aaagtggcagtggagctaaagatccatcacctagctgtgaatgctctgctgaagagcaat
caagtgaatgaaatggaaggaggagctttatttggatttgaccaggaaatgaatcctgga
gcaaagattattaatgaacagactatttttgatgaaacaagctcttgtgcacctgcattt
cgtgttctgaaacaattgatccaaaggtgtcttgcagatgcagttaaatctggaaatgta
tttgctgatgcaatattgcaacatctatatcgatggctttgcagcccacagtcgaaactt
catgaccctgctcttcaccgtgtactgcacaaggttatgcaaaaggtgtttgcattattg
ttggctgagtttcgcaaacttggagccacaatcatttttgcagacttctcaaaagttata
atagacacaggaaagacggatttgccagcagcccaggcttactgtgactctttattgaaa
accttgcaaaccagggatctttttgagtggattgagttagaacctttgcacttctggcac
tcattgctatttatggaccagtacaattatggtggaatccaggccaaatcccatggtgga
aattctgttaatatttctaagccacctaatgaagctgaagaggatgactgcctagtggaa
attgtatctagctggaatattgctgaatacttgccgaaggagactcaggatcattttgtt
ttgattgtctctgaatttatgtacaagccatggaagtttgcacaaaaactaactgaaaat
agagcatcttcgatggacggaaaccaatgcactccatcaatcaccattgctactgctgag
actcttgaattacatgtgacaaaattccttaaagaacagatcagttcttacttcacggac
aagcttcttaggattgttcgggacatcgtcctacatgtcaagggactgaacaaatctgag
aatgatgatacatctcacggatcccctcacattgctggttctaaaatacataagggggat
gcagcattggagttcattaagcatgtctgtgctgttcttgctcttgaccggaatgttcag
catgatattctggtgatgaggaagaatttgttaaaatatgtccgggtgagggaatttgcc
ccagaagcagagtttcatgatccctgcctgtccttcacacttccaaatgttatttgcagc
tattgcaatgactgcagagacctagatctatgccgtgactcagttttacttgcacaagag
ttgcgttgtgctgtgccacagtgtggacagccttacgatcatgaggcaatggagaatgcg
cttcttcaaattgtccgtcagagagaacgtctctaccatatccaggaccttgtgtgcctc
aagtgtagtcaggtgaaagctgcacatctagctgagcaatgcacatgtggcagctcattc
aggtgcaatgaagatgcatctgagtttcatagaaaaatgcaggttttcctgaacatagct
atccatcaaaaatttgaacttctccatgaatgtatgttgtggattctacaaattaattta
cttcaaacctaa

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