Telopea speciosissima (New South Wales waratah): 122660348
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Entry
122660348 CDS
T07910
Name
(RefSeq) uncharacterized protein LOC122660348
KO
K06100
symplekin
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122660348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122660348
03019 Messenger RNA biogenesis [BR:
tss03019
]
122660348
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122660348
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122660348
U7-dependent histone pre-mRNA processing factors
122660348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
122660348
NCBI-ProteinID:
XP_043711545
LinkDB
All DBs
Position
4:complement(3735585..3817770)
Genome browser
AA seq
1347 aa
AA seq
DB search
MAGASREQALSLIAAVKNHGDLAVKLSSLKQAKEILLSVEPSFAAEIFPYLSEIRTSPES
LVRKSLVELVEELGLKVMEQSSILMPVLLALLKDEASVVVRQSIVSGTSFYYSILEKMAL
QFRQSGRVEKWLEELWMWMANFKDVVFGIALEPGSVGTKLLAMKFLETYILLFTPDADDS
ETSIKEGKGRTFNISWVVGGHPVLDPALFTLEANKAFGLLLDQLQSASTLCGSLIIAVIN
CLAAIARRRPFHYSSVLSALLGFDPNFETLRGGHAASIQYSLRTAFLGFLRCTHPAIKES
RERLLRALRAMNAGDAADQVIRQVDKMIKNTERASRDARFGKDDQPSSPLPFFGDLIKKR
PMLQDNDGMTNTDEITAKRTRYGPQGNSAFPGEIPDDSRQDDIAVNGIAPKLPLLDSDLT
PVEQMIAMIGALLAQGERGAESLEILISKIHPDLLADIVIANMRHLPKNPPPLLSRLGNV
PVAPQTSSSSTSSQVAPSTPIISVQYSAAPLQTASPFSSAVTSSTSMPDVTTVPNLPADY
KRDPRRDPRRLDPRRVAVPGGVQSVSLTVKEDTGDMQSGFDSSASLRRPLPPPVVIKVES
ASVPMVTKSDFEFSESSVAPVTDQPTSEENLEVLDEIKKEEPVEEVKVITTSDPAHSPVT
AVVQDAMASIPTDFTMTEGVDPSCSLESDQHSPVGSSTSASEETSQDFPLLPSYIELTED
QKKTLTKLTIERIIGSCKQIQLTDCSQTRMALLARLVAQMDADVDVIVMLQKHLVLDYQH
AKGHELVMHVLYHLHTLMISESSEHSSFAATMYEKFLLAVARSLWDTLPASDKSFSKLLG
EVPHLPDSALKMLEDLCYADGFGFHGKDVRDGDRVTQGLGAVWSLILGRPLNRQACLNIA
LKCAVHSQDEVRAKAIRLVANKLYLLSYVSENIEQFATAEILSVVDQHVPDTDPSTAGST
EQRTEGNLGTQETSISGSHNSEPGASENDSVKDSLQVVQSVPTVSLSQAQRRMSLFFALC
TKKPNLLKLVFDIYGRAPKAVKQAVHRHIPILVRTLGPSKSELLHIISDPPQGSENLLML
VLQILTEETTPSADLIATVKHLYEAKLKDAGILIPMLSSLSKDEVLPIFPRLVDLPLEKF
QAALARILQGSAHTGPALTPAEVLVAIHDINPDKDGIALKKITDACSACFEQRTVFTQQV
LAKALNMLVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQIWKMPKLWVGFLK
CVSQTQPHSFPVLLQLPPPQLESALNKHANLRGPLAAHASQPSIRTSLPRSTLVVLGLAN
EPHMQRSYLPSLHASDTSSSVHGATLT
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttctcgagagcaagcactctcccttattgctgccgtgaagaaccatggt
gatttggcggttaaactatcttctttgaaacaggcgaaagagattctgttatctgtcgag
ccgtcttttgcagcggagatcttcccttacctctccgagattcggacgtcgcccgaaagt
ttggttaggaaatctctcgtcgagttggtggaagagcttggtctgaaggtgatggagcag
tcatctatactaatgccagtcctattggcactcttaaaagatgaagcttctgttgttgtg
agacaatctattgttagtggcacaagtttctactacagcatccttgaaaaaatggcacta
cagtttcgtcaatctggtagagttgaaaagtggctcgaagaactttggatgtggatggct
aatttcaaagatgttgtttttggaattgctttggagcctggttctgttggaacaaagttg
ctggcaatgaaatttttggaaacatacatcctacttttcacgcctgatgccgatgattct
gaaacatctattaaagaaggaaagggacggacctttaatatttcgtgggtggttggaggt
cacccggtcctggatccagccttattcacattggaagcaaacaaagctttcggccttctc
ctggatcagctgcaatcagcaagtactctttgtggttctttgataattgctgttatcaac
tgtcttgcggctattgcgaggaggcggcccttccactatagtagtgttctttctgcactt
cttggttttgacccaaattttgagacactaaggggtggacatgctgccagtatccagtat
tctctaaggactgccttcctggggttcttaaggtgtacccatccagccattaaagagtca
cgtgagagattactaagggctttacgagcaatgaatgctggagatgctgctgatcaagta
attcggcaggttgataaaatgataaagaatactgagcgtgcttcacgtgatgctcgattt
ggcaaggatgatcaaccatcaagtccactacctttttttggggatttgattaagaaacgg
cccatgcttcaggataatgatggtatgactaatactgatgaaattactgctaaacgaact
cgttatggtcctcaaggaaactcagcatttcctggcgagatacctgatgattctaggcag
gatgatattgctgtaaatggaatagctcctaagctgcctttgctggatagtgacttgaca
cctgtggaacaaatgattgccatgattggtgctttactggcacagggtgaaagaggtgcc
gagtcccttgaaattctaatatcaaaaatccatcctgatctgttggctgatattgtaata
gctaatatgaggcacttacctaagaatccccctcccttactaagcagacttgggaatgtt
ccagtagctccacagacaagttcgtcaagcacttcatcacaggtggcacccagcactcct
ataatttcggtgcagtattctgctgctccactacaaactgcatctccattttcttctgca
gtaacgagcagcacatcaatgcctgatgtcaccacagtccctaatcttcctgccgattac
aaacgcgatccacgaagggatcctcgtcgtctcgatccacggcgtgtggctgtacctggt
ggagtacagtcggtgtctctgactgtgaaggaggatactggtgacatgcaatctggattt
gacagttctgcttctctgaggagacctcttccacctcctgtggtgataaaggtggaaagt
gcttcagtacctatggtaaccaaaagtgattttgaattttcagaaagttcagttgctcct
gtaactgaccagcctacatctgaagaaaatttggaggttttagatgaaattaaaaaggag
gaaccggttgaagaggtcaaggttattactacttcagaccctgcccattctcctgttaca
gctgttgtccaggatgcgatggcatcaataccgacagattttacaatgactgagggggtt
gatccatcttgttcactggaatctgatcagcattcccctgttggctctagcacatctgcc
tctgaagagacctctcaagattttcccttgcttccttcttatattgagttgacagaagac
cagaaaaagactctgactaaattgacaattgaaagaattattgggtcatgcaagcaaata
cagctgacagattgcagtcagacacgcatggcattacttgctcgcttggttgctcagatg
gatgctgatgttgatgtcattgtaatgctgcaaaaacatctagttttggattaccaacac
gcgaaggggcatgagcttgtgatgcatgtactatatcatcttcatactctcatgatttcc
gaatctagtgagcactcttcatttgctgccactatgtacgaaaagtttctcctagccgtg
gcaaggtctttgtgggatacgcttccggcttcagacaaatctttcagtaagcttcttggt
gaagttccacatttgcctgactctgccctgaaaatgttagaggacctttgttatgctgat
gggtttggtttccatgggaaagatgtacgtgatggtgaccgtgtcacacagggccttggt
gctgtatggagcttgatcttggggcgtccacttaatcggcaagcatgtttgaatatagca
ttgaagtgtgcggttcattctcaagacgaagttcgagcaaaagctatccgtctggtggca
aataaactctatcttcttagctatgtatcagagaacattgagcagtttgctactgctgag
attttatcagtagttgatcagcatgttcctgatacagatccttcaacggctgggtccacc
gagcagagaacagaaggaaatcttggaactcaagaaacatccattagtggttctcataat
tcagagcctggtgcttccgaaaatgactctgtgaaggattcactacaagttgtccaaagt
gttccaacagtttcgttgtctcaagctcaacgccgcatgtccctttttttcgctctatgt
acaaagaaacccaatctccttaaacttgtttttgacatttatgggcgggctccaaaggct
gttaagcaggcggtccatcggcatatcccaattcttgtgagaaccctaggaccatccaaa
tccgaattgctgcatataatttctgatccaccacaaggaagcgaaaatcttctgatgctg
gttttgcaaatattgactgaagagacaacaccctctgctgatcttattgctactgttaaa
cacttatatgaagctaagttaaaggatgctggtattcttattccaatgctatcttctctt
tcaaaagatgaggttttgcctattttcccaaggcttgttgatcttccattggaaaagttt
caagcagcacttgctcgcatattacagggttcagctcatacaggtccagctttaacacct
gcagaagtgttggttgctatccacgacattaatcctgataaagatggaattgcacttaaa
aagataacggatgcctgctcagcttgttttgagcaacgcacagtttttacacagcaagtc
ttggcaaaggccttaaacatgctggttgatcaaactcctctacccctactgttcatgaga
acagtaattcaagccattgatgcttttcctactctggttgattttgtcatggagatactc
tccaaacttgtgagtaaacagatatggaagatgccaaagttgtgggtagggttcttgaaa
tgcgtatctcagacacaacctcattctttccctgttctattgcagttgccccctccacag
cttgagagtgcactaaacaaacatgcaaacctcagaggtccacttgctgctcatgccagc
cagcctagcataagaacttcattaccaaggtcaacgctggtggttttgggtcttgctaat
gaaccacatatgcaaagatcctatcttccatctttgcatgcttcagacacaagttcttca
gttcatggtgcaacgttgacgtga
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