Telopea speciosissima (New South Wales waratah): 122660727
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Entry
122660727 CDS
T07910
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122660727
03015 mRNA surveillance pathway
122660727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122660727
03041 Spliceosome [BR:
tss03041
]
122660727
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122660727
Spliceosome [BR:
tss03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
122660727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
122660727
NCBI-ProteinID:
XP_043711927
LinkDB
All DBs
Position
1:28433138..28440875
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AA seq
934 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLMKSQKFASELDHVVDMTKVKIDTIKPWIAKRVTEIL
GFEDEVLINFIYGLLDRKDVNGKEVQIQLTGFMEKNTGKFMKELWTLLLSAQKNASGIPQ
QILDATDEELRKKKAEADRITHEIHKRKEKEGREIQLEKLKKMDVGDDELRANKAVPDAV
LKHSQARDSSEEKEADKRNGSRKTNGALKSPNSVDRSPFSRSPSRSVSKSFSNSRSYSDE
RHRSRSMSRSPKPRERSISPQKRNRSPRRRSVSPRYRHSPRKPRSPLRQRSHHSRHRSSS
YSKRRSLSPVRHRLSSPSRRRSPSPVRRRLRSPLRNRSPSPVRRRSPSPVRRRSRRSPSP
PHRRSPPMRRRSPLSVRRRSPTPSRRRSPPRWSSPSPVRGRSPSPVRRFSPPRSPSHRRR
SPLQSSRLRYRSRSPYKSRSPAYRSRRSLSRDRDRRSNGMESRSARDDYVSQRARGKTSP
VRHTPKREVERLGQAHRGSDSESRQPRISLRSPQRDPTVRSNANQKKVAMAHSPEFSQSL
SEPSPHMRKLSPHEDRPCDPSESPVRQGKETMSHDSPSPVRRPRKQIAHHDRSETSSEEE
MSYAREDGDYRINSSERRIRQSPTFGHQNNYSVKDFQEKVYSPERVEGHQSAEAIGSLDN
TELRKKDQDKQSLKASMGTAHSESPSQKDSTVLGNVEYGPWRPDGRSFVPDDIQDGQQSA
KKSGRDSPSLSEKLQKSYSRECNKSEERKHSHSSNAEERDRGHKTEVLRTSLKKVDRKNR
PGSSNSDSEENEEYRRDYMEKRKHKRSSRHEVDLDDNASYDDSEIDERKEAKRRRKEEKR
LRKEERRRRREERHRRREERRASKLKAKSMDTVTPPSDCEKIRNDVVDSELDVDARKESN
PSETEKPESEQKKLEIELRKKALESLRAKKGISH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggttcttccgaggcacctctgccgatcaagatactcgtttctcgaataaa
caggcgaagctgatgaaatcccagaagttcgcttcggaattggatcatgtggtggatatg
actaaggtgaagatagacacgatcaaaccctggatagctaagagggtaacagagattctt
ggattcgaggacgaagttctgatcaatttcatatatggactgcttgatagaaaggacgtg
aatggaaaggaggtgcaaatccagctcactggattcatggagaaaaacactgggaaattc
atgaaagaactttggactctcctgctcagcgctcagaaaaatgctagcggtatacctcaa
cagatattggatgcaacagacgaggaacttaggaagaagaaggcggaagcggatcgaatc
acccatgaaatacataagaggaaagagaaagagggaagggagatccagctagagaagctg
aagaagatggacgttggtgatgatgaattgagggccaataaagctgtacctgatgcagtc
ttgaagcattcacaagccagagactccagtgaagagaaagaagctgataaaaggaatgga
tctaggaagacgaacggggctttgaaatctccaaattcagtggatcgttccccttttagt
cgctctccttccaggtcagtcagcaagtcattttccaattcaaggagctactcagatgaa
aggcacagatcaagaagcatgtccagatcacctaaaccacgagagcgttctatttctccc
caaaagcggaatcgatctccaaggaggcggtctgtttctcctcgttaccggcattcacca
cgaaaacctcgttctcctttgcggcagagatcacatcattcaagacataggtcatcatca
tattcaaagcgaagatctctttctccagtgcggcatagactctcctctccgtcaagacgt
agatcaccttctcctgtgcggcgtagattgcgttctcctttgagaaatagatcaccctct
cccgtgcgacgtagatcaccttctcctgtacgacgtcgatcacgtagatctccatcacct
ccacatcgaaggtctcctcctatgcgtcgaaggtctccacttagtgtccgtaggaggtca
ccgactccttcccggcgtcggtctcctccgaggtggagttccccatcaccagttcggggc
aggtcaccctctccagttaggagattttctcctcctaggtccccaagccataggaggaga
tcaccattgcaatcttcaagactaagatataggagtcgtagtccttataaaagtcgcagt
cctgcatatcgaagtcgtagaagcctaagtagggaccgtgatcgtagatctaatggtatg
gaatccagaagtgcacgtgatgattatgtctctcaaagggcccgtgggaaaacatctcct
gttcgtcatactcccaagagagaggttgaacgactaggtcaggcacacaggggatcagat
tcagagtctcgccaaccacgaatttcattgaggtcaccacaacgagatcctaccgtccga
agcaatgccaatcagaaaaaagttgctatggctcattcaccagaattctctcaaagcctg
tcagaaccttcaccgcacatgaggaaattaagccctcatgaggataggccctgtgatcca
tctgagagtcctgtgaggcaagggaaagaaaccatgagtcatgacagtccaagtcctgtg
agacgaccaagaaaacaaatagctcatcatgacagatcagaaacaagttcggaggaagag
atgagttatgccagggaggatggggattatagaattaattcttcagaaagaagaatcagg
cagtcacccacatttggccatcagaacaattattctgtgaaggacttccaagagaaagtg
tactctcctgaaagagtggaaggtcatcagtctgctgaagctataggcagtctagataac
acagaattgagaaagaaagaccaggacaaacagagtttgaaagcttcaatggggactgct
cattcagaaagtcccagccaaaaagattctaccgtgttgggaaatgttgagtatggacct
tggaggccggatggaagaagctttgtacccgatgatattcaggatggacaacaatctgcc
aagaaaagtggaagagattctccttcattaagtgaaaaattacagaaatcatattccaga
gaatgtaataaatcggaggagaggaagcattctcattcaagcaatgctgaggaaagggac
cggggtcacaagacagaggtattacggacatcattgaagaaggttgataggaagaatcgt
cctggttcctcaaattctgattcagaggaaaatgaggaatacagacgtgattacatggag
aagagaaagcataagagatcaagtaggcatgaagtggatttggatgataatgcatcatat
gatgattctgaaattgatgagaggaaggaggccaagagaagaaggaaggaagagaagaga
ttgaggaaagaggagaggcggcgacggcgtgaagaacggcaccgtagaagggaagaacgc
cgtgcaagcaagctgaaagccaagtcaatggacacagtcactccaccttcagattgtgaa
aaaatccgaaatgatgttgttgattcagaacttgacgttgatgccaggaaagagtcaaat
ccaagtgaaactgaaaagccagagtcagagcagaaaaaacttgagattgagctgcgaaag
aaggctcttgaatctctaagagcaaagaagggcattagtcactaa
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