Telopea speciosissima (New South Wales waratah): 122661338
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Entry
122661338 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122661338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122661338
03012 Translation factors [BR:
tss03012
]
122661338
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122661338
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122661338
Translation factors [BR:
tss03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122661338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
Rad17
Motif
Other DBs
NCBI-GeneID:
122661338
NCBI-ProteinID:
XP_043712637
LinkDB
All DBs
Position
1:complement(17693700..17736317)
Genome browser
AA seq
1029 aa
AA seq
DB search
MSLRYVSASCYTFYRHSLSVSLRGLSVRFCSTVTAMSYRPNYQGGRRGGSTGSGGQGGRR
GGGGGGRGGGRGGGRGEQRWWDPVWRAERLRQMQAEVEVFDENEWWSKMEQMKRGGEQET
IIKRNYSREGQQTLSDMAYQLGLYFHAYNKGKTLVVSKVPLPNYRADLDEHHGSTQKEIQ
MSTETERRVENLLASSREAAGLDDFSGASSQGAKQSLPAVNVVKSSFGLEANNAKEKTSL
ELKNKQEKMKASDHSKAMLSFREKLPAYKMKAEFLRAVADNQVLVVSGETGCGKTTQLPQ
FILEDEISSLRGAECNIMCTQPRRISAISVAARISSERGENLGETVGYQIRLEAKCSVQT
RLLFCTTGVLLRQLIQDPDLTGVSHLLVDEIHERGMNEDFLLIILHDLLPRRPDLRLILM
SATINADMFSKYFGNAPTIHIPGFTFPVEELFLEDLLEKTHYSIKSELENFQGNARRRRR
QPDSKKDPLTEVFEEVDIDSHYKNYSTSTKQSLEAWSGAQLDLGLVEATIEYICRHEGDG
AILAFLTGWDEISKLLDKIRGNNVLGNPNKFLILPLHGSMPTINQREIFDRPPSNMRKIV
LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLFPKVIHDAMPQYQLPEILRTPLQELCLHIKSLQLGNIGSFLAKALQPPDSLAVK
NSIELLKMIGALDDDEELTPLGRHLCKLPLDPNIGKMLLMGSIFQCLGPALTIASALAHR
DPFVLPVNRKEEADAAKRSFAGDSCSDHIALLKAFEAWKDAKSCGRERAFCWENFLSPIT
LQMMEDMRNQFLDLLSDIGFVDKSRGAKVYNRYSDDLEMVCAILCAGLYPNVVQCKRRGK
RSAFYTKEVGKVDIHPASVNAGVVLFPLPYMVYSEKVKTTSIFIRDSTNISDYALLLFGG
NLIPSKTGEGIEMLDGYLHFSASRSVLALIQNLRSKLDKLLLQKIEEPGLDIHAEGKGVV
AAVVELLHS
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtccctacgctacgtaagcgccagctgctacactttttataggcattcactctcagtt
tccctgcgagggctttcggttcgcttctgtagcactgtaactgcgatgtcttaccgtcct
aactatcaaggtggccgccggggcggtagtaccggcagtggcggccaaggtggccgaaga
ggaggcgggggcgggggccgaggtgggggccgtggtggcggtagaggtgagcagcggtgg
tgggatcccgtctggcgggctgaacgtttgagacagatgcaagccgaggttgaagtcttt
gatgagaatgagtggtggagtaagatggagcagatgaagagaggaggtgagcaggagacg
ataattaagcggaactacagtcgtgaaggccaacaaactctatctgacatggcttatcaa
ctgggactttacttccatgcatataacaaggggaagacacttgttgtcagcaaagttcca
ttgccaaattaccgtgcagatcttgatgagcatcatggatcaactcaaaaagagatacaa
atgtccacagaaactgagagaagggttgagaatctgttggctagttccagagaagctgct
ggcttagatgatttctctggtgcatcaagccagggtgctaaacaatctttacccgctgta
aatgtagttaaatccagctttggattggaggctaataatgccaaggagaaaactagtctt
gaactcaagaataagcaagaaaaaatgaaggcaagtgaccattcaaaagcaatgctttca
ttcagggaaaaattaccagcttacaaaatgaaggctgaatttttgagagctgttgctgat
aatcaggtgttggtggtttcaggagagacaggctgtggcaaaactacacagctgccccag
tttatcttggaagatgaaatttcatctcttcgtggggcagaatgcaacataatgtgcact
cagccccgtcgtatatctgctatttctgttgcagcccgaatttcttctgaaaggggagag
aatcttggtgaaacagttgggtaccagatccgcttggaagccaaatgctcagttcaaaca
aggcttctattttgtactactggagtgctgctacggcaattgattcaagatccagattta
actggtgttagtcatttgctagtggatgaaattcatgaacgaggcatgaatgaggacttt
cttttaataattttacatgatcttcttcctcgacgtccagatctacgtcttattctaatg
agtgctactattaatgctgatatgttctccaagtactttggaaatgccccaaccattcat
attcctggatttacttttcctgtagaggagcttttcctagaagatttgctagaaaaaaca
cattacagtatcaagtcagagctcgaaaactttcagggaaatgcacggaggagaagaaga
cagcctgattcaaaaaaagatcctttgaccgaagtgtttgaggaggttgatattgattct
cactacaaaaattacagcacatctacaaaacaatctcttgaagcttggtctggagcacag
cttgacctgggccttgtggaagcaacaattgagtatatctgtcgccacgaaggtgatgga
gctattctcgccttcttgaccggctgggatgagatatctaagctactggataaaattaga
gggaacaacgttcttggaaatcctaacaagtttctcattcttccactacatggctcaatg
cctaccatcaatcagcgtgaaatatttgacagaccacctagtaacatgaggaaaattgtg
ctagcaacaaacattgctgagagtagtataacaatagatgatgttgtctatgttgtagac
tgtggaaaggcaaaggaaactagttatgatgctctaaacaagttggcttgtttgttgcca
tcatggatatcaaaagcttcagcacatcagagacgagggcgtgcaggtcgtgttcagcct
ggtgtctgttataggctgtttccaaaagtaatccatgatgcaatgccccagtatcagttg
cctgaaattctccgaacaccattgcaagaactttgcctccatatcaaaagtttacagcta
ggaaatattgggtcgtttctggcaaaagcacttcagccaccagactctcttgcggttaaa
aattcaattgagcttctcaaaatgattggagctctagatgatgatgaagaacttactcca
cttggtcgtcatctttgcaaattgcctttggatcctaatattgggaagatgcttttgatg
gggtctatctttcagtgccttggccctgcattaacaattgcttctgctcttgcgcatcgt
gacccatttgtcctcccagtaaataggaaagaggaagctgatgctgcaaaaagatcgttt
gctggtgattcctgcagtgatcacattgcccttctcaaagcctttgaagcttggaaggat
gcaaaaagttgtgggagagaaagggcattctgttgggagaatttcttatcaccgattacc
ctgcagatgatggaggacatgagaaatcaatttctggatctactgtcagacattggcttt
gtcgacaaatcccggggagctaaggtgtacaatagatacagtgatgatctggagatggtt
tgtgcaatcttatgtgctgggctctacccaaatgtcgtgcagtgcaaaaggagaggaaag
cgttctgccttctacactaaagaagttggtaaagttgacatccacccagcatctgtcaat
gccggggtcgtcctttttccactcccgtacatggtttacagtgagaaggtgaagacaacc
agcattttcatacgggactcaacgaatatatcagattatgctttgcttctctttggaggc
aacctcattccgagcaaaactggagagggtattgaaatgctcgatggatatcttcatttc
tcagcatcaaggagcgtgttagcattgatacagaacttgagaagcaaacttgataagctt
cttctacagaaaattgaggaaccagggctggacatccatgcagaaggcaagggagtggtt
gctgctgttgtggagttgttacacagctag
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integrated database retrieval system
