Telopea speciosissima (New South Wales waratah): 122662564
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Entry
122662564 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122662564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122662564
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122662564
Spliceosome [BR:
tss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122662564
Complex C
U5 SnRNP specific factors
122662564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
AAA_25
Motif
Other DBs
NCBI-GeneID:
122662564
NCBI-ProteinID:
XP_043714166
LinkDB
All DBs
Position
5:complement(6887237..6895371)
Genome browser
AA seq
2172 aa
AA seq
DB search
MAHLGGGAEAHARFKQYDYRANSSLVLTTDSGPRDTHEPTVKPESLYGKIDPKTFGDRAY
RGKPPESDEKLRKLKKKDWDPEGLPSRQSKRRRLRKESVLSVTEEGDYQPKTKETRAAYE
ALLGVIQQQLGGQPPSVVSGAADEVLAVLKNDAIKNPDKKMEIDGPLNPIPNQVFDQLVS
IGNLITDFQDGGEAAGSAAATADDALDNDMGVVVEFEDEEEEEDDSDFDVVQEVDMEEDD
GLDLNDAGAMQMGRGIDDDDVQEANEEMTLNVQDIDAYWLQRKISQSYEVIDPQHCKKLA
DDVLTILAEGGDREKRLLVLLDFDKFSLIKYLLGNRLKIVWCTRLARAEDQEERKKIEEE
MMGSGSDLAAILEQLHATRATAKERQKNLEKSIREEVRRLKDESTIGDGDREWRGFIDGD
SDSGWGKGQREILPLDKYIFHKGGLLMANKKCELPMGSYRNHSKWYEEVHVPALKPKPLA
PDEELIKISVMPDWAQPAFKGMTQLNRVQSKVYKTALLTAENILLCAPTGAGKTNVALLT
ILHQIALQNPGGSFNNSNYKIVYVAPMKALVAEVVGNLSNRLQHYGVKVKELSGDQTLTR
QQIEETQVIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR
QIETTKEHIRLVGLSATLPNYEDVALFLRVDQEKGLFHFDNSYRPCPLAQQYIGITAKKP
LQRFQLMNDVCYEKVIAVAGKHQVLIFVHSRKETAKTACAIRDTSLAKDALGCFLAEDSA
SREILQSHMELVKSNDLKDLLPYGFAIHHAGMVRGDRQLVEKLFSEGHVQVLVSTATLAW
GVNLPAHIVIIKGTEIYNPEKGAWSELSPLDVMQMMGRAGRPQYDSYGEGIIITGHSELQ
YYLSLMNQQLPIESQFISKLADQLNAEIALGTVQNAREACNWISYTYLYVRMLRNPTLYG
IDPNFLGKDITLEERRADLIHSAGTILDRNNLIRYDRKSGYFQVTDLGRVASYYYITHGT
ISIYNEYLKPTMGDIELCHLFSLSEEFKYVTVRQDEKMEMAKLLDCIPIPIKESLEEPIA
KINVLLQAYISQIKLEGLSLMSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKM
VNKRMWSIQMPLCQFNGIPNEILMKLEKKDLAWQRYYDLSAQEIGELIRYPKMGKPLHKY
IHQFPKLNLAARVQPITRSVLRVELTVTPDFQWEDKVHGFVEPFWVIVEDNDREYILHHE
YFMLKKQYIDEDYILNFTVPIYEPLPPQYFICVVSDRWLGSQSVLPVSFRHLILPEKNPP
PTELLDLQPLPVTALRNPSYEALYQEFKQFNQIQTQVFTVLYNTDDNVLVAAPTGSGKTI
CAEFALLRNHQKGPESIIRVVYIAPIEALTNECYRDWERKFGKGLGMQVVELTGETATDL
KLLEKGQIIISTPEKWDALSRRWKQRKLIQQVSLFIIDEVHLIGGQGGPVLEVIVARMRN
IASQGENKIRIVALSASLANAKDLGEWIGATSHGLFNFHPSVRPVPLEIHIQGVDIANFE
ARMQAMTKPTYTAIVQHAKNGKSALVFVPTRKHAQLTAVDLMTYSSADSGEKPTLLLRLV
EDLEPFISKVSDLMLRDTLRHGVGYLHEGLTSMDQEVVLHLFKAGWIQVCVASSSMCWGM
PLSAHLVVVMGTQYYDGRENAHTEYPITDLLQMMGHASKVLVDNSGKCVILCHAPRKEYY
KKFLYEALPVESHLQHYLHDNLNAEIVVGVIKNKQDAVDYLTWTFMYRRITQNPNYYNLQ
GVDHRHLSDHLSELVENILSDLDATMCVAIKDDMNLIPLNLGMIASYYYISYTTIERFSS
SLIPKMKMKGLLEILANASEYAELSIRPGEEELIRRLINHQRFSFENPKYTDPHVKANAL
LQAHFSRHKVVGNLASDQLEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW
EHDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERQELLQMTDSQLLDIARFC
NRFPNIDMTYEVLKSDSIRTGDDIALQVTLEWVIEERSELGPVYAPRYPKAKEEGWWLVV
GDTETNQLLAIKRVALQRKSKVKLEFIAPAEAGEKSYTLYFMCDSYMGCDQEYEFRVDVK
EVAGAGDKSGRE
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatttgggtggtggtgcggaggcacacgctcgtttcaagcagtatgactacaga
gcaaactcgagccttgtgcttacaaccgattctggtcctcgtgacactcatgagccaacg
gtgaagcctgaatctctatatgggaagatagacccgaaaacctttggtgatcgtgcttac
agaggaaaacccccggaatccgatgagaagctgaggaagttaaagaagaaggattgggac
cctgagggcttgcccagtaggcaaagtaagcggcggcgcctccgaaaggagagcgtcctc
tctgtgacagaggaaggtgattatcagccaaagacgaaggagactcgggcagcatacgag
gccttactcggagtcatacaacagcagttaggaggtcagccaccaagtgttgtgagtggt
gcagctgatgaggtgctggccgttctaaagaatgatgccatcaagaatcctgacaagaaa
atggagattgatgggcctttgaatccaataccaaatcaagtatttgatcaactcgtgtct
attgggaaccttattactgacttccaagacggtggtgaggcagccgggtctgctgctgct
actgctgatgatgctcttgataatgatatgggtgttgttgtcgagtttgaagatgaggag
gaggaagaggacgacagtgattttgatgtggttcaggaagtggacatggaggaagatgat
gggctggacttaaatgacgctggtgcaatgcagatgggtcgtgggatcgatgatgatgac
gtccaagaagccaacgaggaaatgactcttaatgttcaagatatagatgcatattggctc
cagagaaaaatctctcaatcatatgaagtgattgacccacaacactgcaagaaattggca
gatgatgtgcttacaatacttgcagaaggaggtgacagagaaaaaaggctcttggtgctt
cttgattttgataagtttagcctcattaaatatctcttggggaaccggctgaagatagtc
tggtgtacacgtttggcaagggctgaagaccaagaggaaaggaagaagattgaggaagaa
atgatgggttcgggttcagatttggctgctattttggagcagttgcatgccactagagca
actgctaaggaacgccagaagaacttggagaaaagtataagagaagaggtcaggagattg
aaagatgaaagcaccattggagatggggatagggagtggaggggttttattgatggagac
tcagacagtggttgggggaaggggcagcgtgaaatacttcctcttgacaaatacattttt
cataaaggtggtcttctgatggccaataagaaatgtgagcttccaatgggttcgtatagg
aatcatagtaagtggtatgaagaagttcatgtgccagctttgaagccaaagccgcttgct
cctgatgaagagctcataaagatttctgtcatgcccgactgggcgcagccggcttttaaa
gggatgacccagctgaacagagtgcagagtaaagtttataaaactgctctcttgacagca
gaaaatattctcttatgtgctcctactggtgcaggaaaaactaatgttgccttactaacc
attcttcaccagattgcattgcagaacccaggtggatcattcaacaacagcaattataaa
attgtctatgtggctccgatgaaagcacttgttgctgaagtggttggaaatctgtccaat
cggttgcaacattatggtgtcaaagttaaagagctgagtggagatcagaccctgacccgt
caacagattgaagagacacaggtaattgttacaactcctgagaagtgggatattatcacc
agaaaatctggggaccgaacctatacgcagcttgtgaagctacttatcattgatgaaatt
catcttcttcatgataacagagggcctgtgcttgaaagtattgttgcaagaacagttaga
caaattgagacaacaaaagaacatatccggttggtaggattatcggctacactccccaac
tatgaagatgtggccttgtttctccgagttgatcaggaaaaaggactgttccattttgac
aacagttacagaccttgccctcttgctcagcagtatattggaatcacggctaagaagcct
ttgcagagattccagttgatgaacgatgtctgttatgagaaggtcatagctgttgctgga
aagcatcaagttcttatttttgtccattcaaggaaagaaacggccaaaacagcttgtgct
atacgagatacttctcttgcaaaggatgcccttggttgttttttagcagaggacagtgca
agccgtgagatcctgcagagtcatatggagttggtcaagagcaatgatctaaaggacctg
ttgccatatggatttgcaattcatcatgctggaatggtaaggggagatcgccaacttgtt
gagaaacttttttctgaaggccatgttcaagtattggtttcaactgctacccttgcttgg
ggagttaatttgccagcacacattgtgatcatcaaagggacggagatatacaatcctgag
aaaggagcatggtctgagctgagccctctggatgttatgcaaatgatgggtcgtgcagga
aggcctcagtatgactcctatggtgaaggaataattattactgggcatagtgaactgcaa
tactatctttccctcatgaatcaacagcttcccattgaaagtcaatttatatccaaattg
gctgatcagctgaatgctgaaattgctcttgggactgttcagaatgcaagggaggcctgc
aactggattagttacacatatttgtatgttcgtatgttgaggaatccgactctatatggc
atagatccaaattttcttggtaaagacattacattggaggagcggagggccgatctgatc
catagtgctggaacaatcttggacagaaataatttgatcaggtatgatcgcaaaagtggc
tattttcaagttacagacttggggcgggttgctagttactactatataactcatggaacg
atatctatatacaacgagtatttgaagccaacaatgggtgatattgagctttgtcacttg
ttttcccttagtgaagaattcaaatatgttacagtgagacaagatgagaagatggaaatg
gcaaagctcttggattgtatccccatacccataaaggaaagcttggaagagcctattgcc
aagattaatgtgctacttcaggcatatatttcacaaattaagctcgaggggctttcattg
atgtcagacatggtgttcattacccagagtgctggtcgtcttctgcgagcccttttcgag
attgtccttaagagaggatgggcacaattagctgagaaggctttgaatctgtgtaagatg
gttaacaaaaggatgtggagcatccagatgcccctttgccagttcaatgggattccaaat
gagatcctgatgaaactagagaagaaagatttggcctggcagaggtactatgatctttct
gctcaggagattggagagctcatacgctaccctaagatggggaaaccacttcacaagtac
attcaccagtttccaaagcttaacctggctgcacgtgttcaacctatcactcgttctgtg
ctgagagttgaactcactgtaactccagattttcagtgggaggacaaagtccatggattt
gttgaaccattctgggttattgttgaggacaatgacagggaatacattcttcatcatgag
tatttcatgcttaagaagcagtatattgacgaggactacattttaaatttcacagtgcca
atctatgaacctttaccacctcagtacttcatttgtgttgtgtcagataggtggcttggg
tctcagtctgtcttacctgtttctttcaggcacctaatcttgcctgaaaaaaatcctcca
cctactgaattgttggacttgcaaccattgccagtgacagcattgagaaacccctcatat
gaagctctctatcaagaattcaagcaattcaatcagatccaaactcaagttttcaccgtg
ttgtacaacactgatgataatgtattggttgcagccccaacagggagtgggaagaccatt
tgtgcagagtttgctcttttgaggaatcatcagaaaggacctgaatctatcattcgtgta
gtttatattgctcctattgaggctctgaccaatgaatgttatcgtgattgggagcggaag
tttggaaaaggcctagggatgcaggtggttgaattgacgggtgaaactgcaacagacttg
aaacttcttgagaaagggcaaataattatcagcacccctgagaaatgggatgctttatcc
cgccgctggaaacagcggaagcttattcagcaggtcagcctttttataatcgatgaggtc
cacttaattggtggccaagggggtcctgtattggaagttatagtcgctcggatgagaaac
attgcaagtcagggtgagaacaaaatacggatagtggcactttcagcttctcttgcaaat
gccaaagaccttggggaatggataggtgcaacctctcacggccttttcaattttcatcca
agtgttcgtcctgtgcctctggagattcacattcaaggagtggatatagctaattttgaa
gcaaggatgcaagcaatgacaaaaccaacatacactgctattgttcaacatgcaaagaat
ggaaaatctgctctggtgtttgttccaactaggaagcatgcacagcttacggcagttgat
ctgatgacttactcaagtgcagacagtggggagaagccaacattgctattaagactagta
gaagatttggaacctttcatttcaaaggtgagtgatctcatgcttcgtgatactcttcgt
catggtgtgggctacttgcatgaaggtcttaccagcatggatcaggaggttgtgttgcat
ttatttaaagctgggtggattcaggtctgtgttgctagcagctcaatgtgctgggggatg
ccattatctgctcatttggttgtggttatgggaacacaatattatgatgggcgggaaaac
gctcacacagagtacccaattactgatctgttgcagatgatgggtcatgcgagtaaagtt
cttgtggataattctgggaaatgtgttatcctctgccatgcacctcgtaaagaatactat
aagaagttcttgtatgaagcattgccagtcgaaagtcatctgcagcattacttgcatgac
aatctgaatgcagaaattgttgtcggagtaatcaagaacaaacaagatgctgtggattat
ctgacgtggacattcatgtaccgtaggatcactcaaaatcctaactactacaaccttcag
ggagttgaccacaggcatctctctgatcatctctcagagcttgtggagaacatattgagc
gacttagatgcaactatgtgtgttgctataaaggatgatatgaaccttattcctctgaac
cttggcatgatagcatcatactactacatcagctacactacaatagaacgttttagttcg
tcattgattcccaaaatgaagatgaaaggcctactggagattttggctaatgcttcagaa
tatgcagagctttcaataagacctggggaggaagagttgataagaaggttgattaaccac
cagagattttcatttgagaaccccaaatatactgacccacatgtaaaagcaaatgctttg
ctacaagctcacttctcaaggcacaaagttgttgggaacctagcttctgaccagctagaa
gtactcctttctgctagtaggttacttcaagctatggtagatgttatatccagcaatggg
tggcttagcctggctcttcttgcaatggaagtgagtcagatggtaacacagggcatgtgg
gagcatgattctatgcttctacaacttcctcacttcacgaaagagttggcaaaaaaatgt
caagagaacccgggaaagagtatagaaacggtgtttgacttagtggagatggaggatgat
gagaggcaagaattgctgcagatgacagattcacagttgctggacattgcacgattctgc
aatcgtttccccaacatagatatgacatatgaggtgctgaagagtgacagcataagaact
ggggatgatattgccttgcaagttacccttgagtgggttattgaagagaggtctgagttg
ggaccggtgtatgctcccaggtatcccaaagccaaagaagaaggatggtggcttgtggta
ggtgatactgaaactaaccagctgcttgcaatcaagagggttgccctgcagcgcaagtcg
aaagtcaagcttgagttcattgctccagcagaagctggagagaagtcatatactctttat
tttatgtgtgattcatacatgggttgtgaccaggagtatgaatttagagttgatgtcaaa
gaagttgcaggtgcaggtgataagagtgggagagaatga
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integrated database retrieval system
