KEGG   Telopea speciosissima (New South Wales waratah): 122662807
Entry
122662807         CDS       T07910                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03018  RNA degradation
tss03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122662807
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122662807
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tss03019]
    122662807
   03041 Spliceosome [BR:tss03041]
    122662807
Messenger RNA biogenesis [BR:tss03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122662807
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122662807
Spliceosome [BR:tss03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122662807
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 122662807
NCBI-ProteinID: XP_043714459
LinkDB
Position
1:3906317..3910444
AA seq 146 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDSFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGVGGRQVKGIGRSQDD
GGAKGMGGGRGRGGSGANRGGGRGRS
NT seq 441 nt   +upstreamnt  +downstreamnt
atgctgcctctttctctactgaagacagcgcaaggtcatcctatgttggtagaactgaag
aatggggagacctacaatgggcatctagtgaattgcgacacttggatgaacattcatctt
cgggaagtcatctgtacctcaaaggatggggacagtttttggcgaatgccagaatgttac
atccgtgggaatacaattaagtatcttcgagttccagatgaggtaattgataaagttcag
gaagaaaccaagagccgagcagataggaagcctcctggagttggccgtggaaggggaaga
ggcagggaggatggtgttggcgggaggcaggtaaaaggcattgggcgtagccaagatgat
ggaggtgctaaaggcatgggtggaggtcgaggcaggggtgggagtggtgccaacagaggt
ggaggtcgtggtcgtagctga

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