KEGG   Telopea speciosissima (New South Wales waratah): 122664062
Entry
122664062         CDS       T07910                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122664062
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tss03041]
    122664062
Spliceosome [BR:tss03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    122664062
 Complex C
   U5 SnRNP specific factors
    122664062
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_SCAP Beta-prop_IFT140_1st eIF2A Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_Nup120_160 Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_RIG_1st RMC1_N Cytochrom_D1
Other DBs
NCBI-GeneID: 122664062
NCBI-ProteinID: XP_043715683
LinkDB
Position
6:complement(47931721..47939890)
AA seq 342 aa
MQVVHRGGENALGAPRPMEWSAVPYNAQAPGPIGKQRTSSLESPIMLLAGHQSAIYTMKF
NPAGTVIASGSHDKDIFLWNVHGDCKNFMFLRGHKNAVLDLQWTTDGTQIISASPDKTLR
AWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRQRGAIQTFPDKY
QITAVSFSDASDKIFTGGIDNDVKVWDLRRNEVTMTLQGHTDMITGMQLSPDGSYLLTNS
MDCSLRIWDMRPYAPQDRCVKILTGNLHNMEKNLLKCSWSPDGRKVTAGSADRMVYIWDT
TTRNILYRLPGHTGSVNECVFHPHEPIIGSCSSDKQIYLGEI
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgcaagttgttcatagaggaggtgagaatgctctgggggctccgagaccaatggaatgg
tctgcagttccttacaatgctcaagcacctggaccaattggaaaacagcggacgtcgagt
ctggaatcaccaattatgttgttagcaggtcaccagagtgctatatataccatgaagttc
aatccagcagggacagtcatcgcatccggctctcatgacaaagacatattcctttggaat
gttcatggggattgcaaaaacttcatgttcttgagagggcataagaatgcagtcttggat
cttcaatggactactgatggcacccagatcatatcagccagtcctgataagacattaaga
gcatgggatgttgaaacagggaaacagataaaaaagatggcagaacattcatcctttgtg
aattcatgctgcccatcccgtcgaggtcctccccttgttgttagtggatctgatgatggt
actgcaaagctttgggatctgcgtcaaagaggagcaatacagacatttccagacaaatac
cagatcactgctgttagcttctccgatgcgtcggataagatattcactggtgggatagac
aatgatgtgaaggtttgggatctacgtaggaatgaggttaccatgactcttcaaggtcac
acagatatgataacaggtatgcagttgagtcctgatggctcctatctcctaaccaatagc
atggattgttctcttcgcatttgggatatgcgcccatatgccccccaggaccgttgtgtc
aagatattaacagggaatctgcacaacatggaaaagaacctgttgaaatgtagctggtcc
cctgatggaaggaaagtcactgctggcagtgcagatcggatggtatatatttgggataca
accactcgaaacatcttgtataggctccctggccacactggatctgtaaatgagtgtgtc
ttccatccccatgaacccatcattggatcttgcagtagcgataaacagatctatcttggt
gagatctga

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