Telopea speciosissima (New South Wales waratah): 122664174
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Entry
122664174 CDS
T07910
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122664174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tss03400
]
122664174
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122664174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
BAR_4
Motif
Other DBs
NCBI-GeneID:
122664174
NCBI-ProteinID:
XP_043715822
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All DBs
Position
6:36900781..36954763
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AA seq
942 aa
AA seq
DB search
MEDNLQEQNKLPELKLDAKQAQGFISFFKTLPNDPRAVRLFDRRDYYTAHGDNAMFIAKT
YYHTTTAMRQLGTGSNGISSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLTKSG
TPGNLGSFEDILFANNEMQDSPVIVALCPNFRENECIVGMGYLDLTKRILGLAEFIDDSQ
LTNVESALVALGCKECLLPIEGGKSIQSKTLLDALSRCGVLLTERKKTEFKSRDLVQDLG
RLVKGSIEPVRDLLSSFEYASWALGALLSYAELLADESNYGNYTIRRYNLDSFMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVNEINCRLDLVHTF
VEDTALRQDLRQHLKRISDIERLMHTLEKKRASLQHIVKLYQSSIRLPYIKSALERYDGQ
YLTLIKDRYLDPLEYWTDDDHLNKFVGLVEASVDLDQLENGEYMISSSYDPKLSALKDER
DAVEKQIQNLHKQIANDLDLPIDKALKLDKGTQFGHVFRITKKEEPKVRKKLTTHFIVLE
TRKDGVKFTNTKLKKLGDQYLKLFEEYTSCQKELVVRVVQTAASFHEVFESLAGILSELD
VLLSFSDLATSCPTPYTRPDITPSDDGDIILEGSRHPCVEAQDGVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLVIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFATH
FHELTALAHDNSDHEPHRQSLLGVENYHVSAHIDSSSHKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVSLAREKAAELENFSPASVISNDTREEVGCKRKRVCGPDEMSSGVVRANKF
LQDFSALPLEKMDLKQALQQVNKLRSDLEKDAEDCRWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaggataatttgcaggagcaaaacaagctgccagagctaaaacttgatgccaagcaa
gctcaagggtttatttcattcttcaaaaccctaccaaatgacccaagggctgttcgatta
tttgatcgtcgggattactacactgcccacggagataatgcgatgttcattgccaagaca
tactatcatacgactactgctatgcggcagctgggtactggctctaatggtatttctagt
gtgagtgtcagtaaaaatatgtttgaaaccattgcccgtgatctcctgctggagagaaca
gaccatactttggagctctatgagggtagtgggtcgaactggaggttgacaaagagtgga
acaccaggaaaccttggtagttttgaagatatcttgtttgccaacaatgaaatgcaggac
tctcctgtgattgttgcactatgcccaaacttccgtgaaaatgagtgcattgttggaatg
ggctatttggacctaactaagaggatacttgggttggcagaatttattgatgatagccaa
ttaacaaatgttgagtcagctttggtggctcttggttgcaaagagtgtctcctgccaatt
gagggaggaaagtccatccagagcaaaactctgcttgatgcattgtctagatgcggcgtg
cttctgactgagagaaagaaaacggaatttaagtcaagagatttggtgcaggatcttggt
cgacttgtcaaaggttctattgaaccagttcgtgatttgctttccagctttgaatatgct
tcctgggctctgggggcattactttcttatgcagaattactagcggatgagagcaactat
gggaattacaccatccggcgttataaccttgacagtttcatgaggttagattctgctgct
atgagagcattaaatgttctggaaagcaaaacagatgcaaacaaaaattttagcctgttt
ggtcttatgaatagaacctgtactgctggcatgggaaaacgactactaaacaggtggttg
aaacaacctctattagatgtgaatgagatcaattgtaggctggatttggtccatacattt
gtggaggatactgctcttcgtcaggatcttaggcagcatctaaaaagaatttcagatata
gagcgcctgatgcatactcttgaaaagaaaagggctagtctgcaacacatagtaaaactt
tatcagtctagtatccggcttccttacatcaaaagtgccctggagcgttatgatgggcaa
tatttaacattgattaaggacaggtatctggatccccttgagtactggaccgatgatgat
cacttgaacaagtttgttggtcttgttgaagcttctgttgacctggaccagcttgagaat
ggggagtacatgatatcttctagttatgacccaaaactatcagcactgaaggatgagcga
gatgcagttgagaagcagatacagaatttacataaacaaattgccaatgaccttgatctt
cctatagacaaggcactgaagttagacaaaggcacacaatttggacatgtctttagaatc
acaaaaaaagaggagccaaaagttaggaagaagcttactactcattttattgtccttgaa
actcggaaggatggggtcaagtttacaaacacaaagcttaaaaagttaggggatcagtat
ctgaaactatttgaggagtatactagttgtcaaaaagagctggttgttcgagtagttcaa
actgcagcaagtttccatgaggtcttcgagtctttagctgggattctttcagaactggat
gtattgcttagtttttctgatctggctactagttgtcctactccgtacacccgaccagac
atcactccttctgatgatggggatattatacttgaaggaagtaggcatccttgtgtggag
gctcaagatggggtgaattttataccaaatgattgtagacttgtaaggggaaagagttgg
ttccagattataacaggaccaaacatgggtggaaaatcaacattcatccgacaggttggt
gtgaacatcctgatggcacaagttggttctttcgttccttgtgacaaagcaagcattagt
gttcgtgattgtatttttgctcgtgtaggtgcgggagattgccaattgcgtggggtctct
actttcatgcaagaaatgctcgagactgcatcaatattaaaaggagcgactgataagtct
cttgtaattattgacgagttaggccgtgggacatcaacttatgatggatttggtttggct
tgggctatatgtgagcatcttgtagaggtcacccgagcaccaactttgtttgcaacacat
tttcatgaattgactgcattagctcatgataatagtgatcatgagcctcataggcagtcc
ttacttggtgtggaaaattatcatgtcagtgcacatattgattcatcaagtcacaaactg
acgatgctttacaaggttgaaccaggggcttgtgatcaaagttttggtattcatgttgca
gagtttgcaaacttccctgagagtgttgtttcccttgctagagaaaaggctgcggagttg
gaaaatttttcaccagcttcagtcatttcaaatgacacaagggaagaggttgggtgtaaa
cgcaagcgtgtatgtggtcctgatgaaatgtcaagtggtgttgttagggcaaacaagttt
ttgcaggacttttctgcattgccattagagaagatggacttgaagcaggccctgcaacaa
gtgaacaaattgagaagtgatttggagaaagatgcagaagattgtcgctggctccagcaa
tttttctag
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