KEGG   Telopea speciosissima (New South Wales waratah): 122664174
Entry
122664174         CDS       T07910                                 
Name
(RefSeq) DNA mismatch repair protein MSH2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    122664174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tss03400]
    122664174
DNA repair and recombination proteins [BR:tss03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     122664174
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II ATG17_like BAR_4
Other DBs
NCBI-GeneID: 122664174
NCBI-ProteinID: XP_043715822
LinkDB
Position
6:36900781..36954763
AA seq 942 aa
MEDNLQEQNKLPELKLDAKQAQGFISFFKTLPNDPRAVRLFDRRDYYTAHGDNAMFIAKT
YYHTTTAMRQLGTGSNGISSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLTKSG
TPGNLGSFEDILFANNEMQDSPVIVALCPNFRENECIVGMGYLDLTKRILGLAEFIDDSQ
LTNVESALVALGCKECLLPIEGGKSIQSKTLLDALSRCGVLLTERKKTEFKSRDLVQDLG
RLVKGSIEPVRDLLSSFEYASWALGALLSYAELLADESNYGNYTIRRYNLDSFMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVNEINCRLDLVHTF
VEDTALRQDLRQHLKRISDIERLMHTLEKKRASLQHIVKLYQSSIRLPYIKSALERYDGQ
YLTLIKDRYLDPLEYWTDDDHLNKFVGLVEASVDLDQLENGEYMISSSYDPKLSALKDER
DAVEKQIQNLHKQIANDLDLPIDKALKLDKGTQFGHVFRITKKEEPKVRKKLTTHFIVLE
TRKDGVKFTNTKLKKLGDQYLKLFEEYTSCQKELVVRVVQTAASFHEVFESLAGILSELD
VLLSFSDLATSCPTPYTRPDITPSDDGDIILEGSRHPCVEAQDGVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLVIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFATH
FHELTALAHDNSDHEPHRQSLLGVENYHVSAHIDSSSHKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVSLAREKAAELENFSPASVISNDTREEVGCKRKRVCGPDEMSSGVVRANKF
LQDFSALPLEKMDLKQALQQVNKLRSDLEKDAEDCRWLQQFF
NT seq 2829 nt   +upstreamnt  +downstreamnt
atggaggataatttgcaggagcaaaacaagctgccagagctaaaacttgatgccaagcaa
gctcaagggtttatttcattcttcaaaaccctaccaaatgacccaagggctgttcgatta
tttgatcgtcgggattactacactgcccacggagataatgcgatgttcattgccaagaca
tactatcatacgactactgctatgcggcagctgggtactggctctaatggtatttctagt
gtgagtgtcagtaaaaatatgtttgaaaccattgcccgtgatctcctgctggagagaaca
gaccatactttggagctctatgagggtagtgggtcgaactggaggttgacaaagagtgga
acaccaggaaaccttggtagttttgaagatatcttgtttgccaacaatgaaatgcaggac
tctcctgtgattgttgcactatgcccaaacttccgtgaaaatgagtgcattgttggaatg
ggctatttggacctaactaagaggatacttgggttggcagaatttattgatgatagccaa
ttaacaaatgttgagtcagctttggtggctcttggttgcaaagagtgtctcctgccaatt
gagggaggaaagtccatccagagcaaaactctgcttgatgcattgtctagatgcggcgtg
cttctgactgagagaaagaaaacggaatttaagtcaagagatttggtgcaggatcttggt
cgacttgtcaaaggttctattgaaccagttcgtgatttgctttccagctttgaatatgct
tcctgggctctgggggcattactttcttatgcagaattactagcggatgagagcaactat
gggaattacaccatccggcgttataaccttgacagtttcatgaggttagattctgctgct
atgagagcattaaatgttctggaaagcaaaacagatgcaaacaaaaattttagcctgttt
ggtcttatgaatagaacctgtactgctggcatgggaaaacgactactaaacaggtggttg
aaacaacctctattagatgtgaatgagatcaattgtaggctggatttggtccatacattt
gtggaggatactgctcttcgtcaggatcttaggcagcatctaaaaagaatttcagatata
gagcgcctgatgcatactcttgaaaagaaaagggctagtctgcaacacatagtaaaactt
tatcagtctagtatccggcttccttacatcaaaagtgccctggagcgttatgatgggcaa
tatttaacattgattaaggacaggtatctggatccccttgagtactggaccgatgatgat
cacttgaacaagtttgttggtcttgttgaagcttctgttgacctggaccagcttgagaat
ggggagtacatgatatcttctagttatgacccaaaactatcagcactgaaggatgagcga
gatgcagttgagaagcagatacagaatttacataaacaaattgccaatgaccttgatctt
cctatagacaaggcactgaagttagacaaaggcacacaatttggacatgtctttagaatc
acaaaaaaagaggagccaaaagttaggaagaagcttactactcattttattgtccttgaa
actcggaaggatggggtcaagtttacaaacacaaagcttaaaaagttaggggatcagtat
ctgaaactatttgaggagtatactagttgtcaaaaagagctggttgttcgagtagttcaa
actgcagcaagtttccatgaggtcttcgagtctttagctgggattctttcagaactggat
gtattgcttagtttttctgatctggctactagttgtcctactccgtacacccgaccagac
atcactccttctgatgatggggatattatacttgaaggaagtaggcatccttgtgtggag
gctcaagatggggtgaattttataccaaatgattgtagacttgtaaggggaaagagttgg
ttccagattataacaggaccaaacatgggtggaaaatcaacattcatccgacaggttggt
gtgaacatcctgatggcacaagttggttctttcgttccttgtgacaaagcaagcattagt
gttcgtgattgtatttttgctcgtgtaggtgcgggagattgccaattgcgtggggtctct
actttcatgcaagaaatgctcgagactgcatcaatattaaaaggagcgactgataagtct
cttgtaattattgacgagttaggccgtgggacatcaacttatgatggatttggtttggct
tgggctatatgtgagcatcttgtagaggtcacccgagcaccaactttgtttgcaacacat
tttcatgaattgactgcattagctcatgataatagtgatcatgagcctcataggcagtcc
ttacttggtgtggaaaattatcatgtcagtgcacatattgattcatcaagtcacaaactg
acgatgctttacaaggttgaaccaggggcttgtgatcaaagttttggtattcatgttgca
gagtttgcaaacttccctgagagtgttgtttcccttgctagagaaaaggctgcggagttg
gaaaatttttcaccagcttcagtcatttcaaatgacacaagggaagaggttgggtgtaaa
cgcaagcgtgtatgtggtcctgatgaaatgtcaagtggtgttgttagggcaaacaagttt
ttgcaggacttttctgcattgccattagagaagatggacttgaagcaggccctgcaacaa
gtgaacaaattgagaagtgatttggagaaagatgcagaagattgtcgctggctccagcaa
tttttctag

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