Telopea speciosissima (New South Wales waratah): 122664280
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Entry
122664280 CDS
T07910
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122664280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122664280
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122664280
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122664280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
122664280
NCBI-ProteinID:
XP_043715965
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All DBs
Position
6:59912734..59923785
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AA seq
621 aa
AA seq
DB search
MSGLFNSGLNGSSSNHQDTAGRPFGSPFSVQSASTAPVFHHTGNVQGMHNIHGSFNIPNM
PGTLASRNSAMTSVPPNGVQQPAGSLSTGRFASNNLPVALSQISHASSHGHSGVTNRGGL
GVAPIIGNTVPRITSSMGNIVGAGNVGRSLSSAGGLSVSGLASRLNLTGNSGSGSLSVQG
PNRLMGGMLPQAPQVLSILGNSYSPGGPLSQSQVQGGNNALSSMGMLNDVNSNDNSPFDI
NDFPQLSGRPSSAGGSQGQLGSLRKQSVGVLQQNQEFSIQNEDFPALPGYKGGNTDYAMD
LHQKEQVNDSAMSMMQSQHFPIGRSSGFSLGGTYASHRQQQQQHSPSVGGSGVPFRSANS
QDLLHIHGSDLFPSSHASYHSQVQNNGPPPGLRSVNSPNSVSGLGSYDQLIHQYQQLQSQ
SQFRLQQMSAVGQSYRDQNVKAMQAVPDRFGLLGLLSVIKLSNPELNSLALGTDLTTLGL
NLSSTNDIHKKFASPWSDEPAKGELEYAVPECYYAKLPPTLHQGYFAKFQPETLFYIFYS
MPKDDAQLYAANELYNRGWFYHKDLQLWLIRVSNMEPLVKTNTYERGSYLCFDPNTWQTI
GKDNFVLHYEMLEKRPVLTQH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcctattcaattcagggctcaacggatcatcctcaaatcatcaagacactgca
ggaaggccttttggatcaccgttttctgtacagtctgcttccactgcccctgtttttcat
cacactggaaatgttcaaggaatgcataacattcatgggagcttcaacattcccaacatg
ccaggcacacttgcatcaagaaactcagcaatgaccagtgtcccgccaaatggtgtccaa
caacctgcaggaagtctttctactggacgttttgcatcgaacaaccttcctgttgctctt
tctcagatctctcatgccagctcacatgggcattctggggtcactaatagaggaggattg
ggagtcgctccaatcataggaaacactgttcctcgaattacaagctcaatggggaacatt
gttggtgcgggcaatgtgggaaggagcttaagttctgctggaggactgtccgtgtctggt
cttgcttctcgtttgaatttgacgggaaatagcgggtctggtagtcttagtgtacaagga
cctaacagactaatgggtggcatgcttccacaagcaccgcaggtgttatcaatactagga
aattcttattctcctggtggccctttatctcaaagccaagtccaaggagggaataatgcc
ttaagttccatgggaatgctaaatgatgttaactctaatgacaattctccttttgatata
aacgattttcctcagttgagtggacgcccaagttctgctggtggttcacaaggtcaattg
ggttctctacggaagcagagtgttggtgttctccaacaaaaccaagaattcagcatccaa
aatgaagattttccagcgttacctggatataaaggtggcaatactgattatgcaatggat
ctgcaccaaaaagaacaagttaatgacagtgccatgtctatgatgcaatcccagcacttc
cctatagggagatcaagtggcttcagcttaggaggtacatatgcatcccatcgccagcaa
caacagcagcattctccatcagtgggtggtagtggggttcccttcagatccgcaaatagc
caagatctactccatatccatggttctgatctattcccatcttcccatgcaagctatcac
tcgcaggttcaaaataatgggccaccacctggattgagatctgttaactctcccaattca
gtttctggtttgggatcgtatgaccagcttattcatcaatatcaacagctccagagccag
tctcagtttcgattgcagcaaatgtctgctgtgggtcagtcatatagagatcaaaatgtg
aaggccatgcaggcagtgcctgataggtttggcttgcttggtttattaagtgtcataaaa
ttgagcaatccagagctgaattctctcgctctagggactgatttgacaactcttgggctg
aatttgagttcaactaatgatattcacaaaaagtttgcttccccctggtctgatgagcct
gctaagggagaactcgaatacgcagtgccagagtgctattatgctaaactaccgcctaca
ctacatcaaggctactttgcaaaattccagccagagacattgttttatattttttacagc
atgccaaaagatgatgcccaattgtatgccgctaatgaattgtacaacagaggttggttc
taccataaagatctgcaactgtggctcataagggtctccaacatggagcctctggttaaa
acgaacacgtatgaaaggggttcctatctctgttttgacccaaatacatggcaaactatt
gggaaggataattttgtccttcattatgaaatgttggagaagagaccagtgttgacgcaa
cattag
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