Telopea speciosissima (New South Wales waratah): 122664356
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Entry
122664356 CDS
T07910
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122664356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tss04121
]
122664356
Enzymes [BR:
tss01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
122664356
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122664356
Multi subunit type E3
ERAD complex
122664356
LMBR1L-GP78-UBAC2 complex
122664356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-RING_11
zf-C3HC4_3
zf-RING_16
zf-RING_5
zf-C3HC4_4
zf-HC5HC2H
E3_UbLigase_EDD
PHD
zf-RING_Vps41
Endonuclease_7
RINGv
Motif
Other DBs
NCBI-GeneID:
122664356
NCBI-ProteinID:
XP_043716069
LinkDB
All DBs
Position
6:58667565..58703899
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AA seq
586 aa
AA seq
DB search
MGVSYLLISAICTVLSLVGLEWWTESKLYQFKLDGSIGDNIHSENASHALELLLGSHVTI
ALLANFILNLFILVILCLKTIFFVKLYPSEARKVVERLINYVIYKGTFLPLVIPPTVFQA
CMWLTWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSVFLLVLSIDFFGIKLCL
MIYKTLGSTMFLLLFFEPLGIAFETLQAIMVHGFQLLDIWHRHSAVSSPDCQGSQFFDRS
AAGSLCEWKGILIRNFGFFLDMMTLLMALGHYLHIWWLHGMAFHLVDAVLFLNIRALAST
IYKRIKGFVKLRLALNALHEALPDATSEEIRAYDDECAICKEPMAKAKKLSCNHLFHLAC
LRSWLDQGLSEIYSCPTCRRPLFVVRPEENTNPHTGDVTDNEQLAHQIGSGSEWQNTSGH
ALPIGAFSNLQQNPSESFPWRGMGLDSSWVHPWPNQGLDGAGPSTAIRSVGLGRVQMMMR
HLTSVGENYAQTALEDAPWSLWPVTHPQAVPGSSVPSVPTAVRYAGNAGGLTFRSVSPSA
NDNISSILAMADTVREVLPHIPDDLIFQDLQRTNSVAVTVNNLLQI
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcagttacttattaatctcagcaatctgtacggtgctaagcttggtagggctt
gaatggtggacggaatccaaactataccaattcaagttagatggctccattggcgataat
attcattcagagaatgctagccatgcactagagctgcttttgggttcacatgtcacaatt
gcgctgctagcaaattttatactcaacttattcattttagtcattctctgtcttaagact
atattttttgtgaagctgtatccatcagaggctcgaaaagtggtggaacgccttattaac
tatgttatttacaaggggacatttcttccattggtaatccctccaacggtatttcaagct
tgcatgtggttaacgtggttgacagttctttgttccttgaagatgttccaagcattggct
agagaccggcttgaacggttgaatgcatctccttctgcaactccatggacatattttcgt
gttttttcagtcttcttgttggttctctccatcgatttcttcgggataaagttgtgtctc
atgatatacaaaaccttgggttcaacaatgtttctgctgttgttctttgaaccactgggt
attgcttttgagacattgcaggccattatggttcatggatttcagttacttgatatatgg
caccgtcattcggcggtaagcagcccagattgtcaaggatcccaattttttgatagatcg
gcagcaggttctttatgtgaatggaagggcattcttattcggaattttggttttttccta
gacatgatgaccttgttaatggcccttggtcattacttgcatatttggtggcttcatggc
atggcatttcatcttgtggatgcagtccttttcctaaatatacgtgctttggctagtacc
atatataagcggatcaaaggatttgtcaagctgaggttagctctaaatgcccttcatgag
gctcttcctgatgcgacttctgaagagatacgagcatatgatgatgaatgtgctatttgt
aaagaaccgatggcaaaggctaaaaagctatcttgcaatcacctttttcatcttgcatgc
ctgcggtcttggttggatcagggtctgagtgagatttattcctgccctacatgtcgaagg
ccactctttgtggtcagacctgaagaaaatactaatccccatactggagatgtaacagat
aatgagcaacttgctcatcaaattggttcaggatcagagtggcaaaacacatctggacat
gcacttcctattggggcattctcaaacttgcaacagaacccctcagaaagcttcccctgg
agggggatggggcttgattcaagttgggttcatccttggccaaaccagggcctcgatggt
gctggcccttctactgcaattagatcagttggactgggtagagttcagatgatgatgaga
cacctcacatctgtaggcgaaaactatgcccagactgcccttgaagacgctccttggagc
ctttggcctgtgacccaccctcaagctgttccaggttcctctgttccatctgttccaact
gctgtaagatacgctggaaatgctggtggtttaacttttagaagtgtgtctccctctgct
aatgacaatatatcaagtatacttgcgatggctgacacagtacgggaggtgctgcctcat
attcctgatgatttaatttttcaggacctgcagagaacaaattctgtagctgttactgtg
aataatcttcttcagatatga
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