Telopea speciosissima (New South Wales waratah): 122664563
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Entry
122664563 CDS
T07910
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122664563
03015 mRNA surveillance pathway
122664563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122664563
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122664563
5.6.2.5 RNA 5'-3' helicase
122664563
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122664563
mRNA cycle factors
Common to processing body (P body) and stress granule
122664563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
SRP54
PhoH
AAA_16
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
122664563
NCBI-ProteinID:
XP_043716368
LinkDB
All DBs
Position
6:54293370..54329730
Genome browser
AA seq
1277 aa
AA seq
DB search
MAAQTVVNNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFHELSQPIRSSVWPSASDSV
ADPSDRGADLQAESGGTVSVASGSASKGKGGGGSSSGGSSNQAAVDALAAGMSGLNFEET
GDDENYEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFPKEDNESRLVPGDELRLRYPGDATHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHSFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQVVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQST
EPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGSV
GSPNPNADRRGSRSKGSYMPFGPPNGTHKPGVHPTGFPVPRIPLPPFPGGPHSQPYAIPT
RGAVHGPIGAVPQVPQAGSRGFGAGRGNAGGPIGGHLSHQQGSQQSMGNIGSTFNFPALD
NPNSQPSAGGNLSQTGLMTQMPVQGLSQTFRDGFSIGGMSQDFLGDDFKSQGSHVAYNVA
DFSTQASQSGYGVDYVTQGAQARFPGSFLNQNSQAGYSHLGTGNDLISQDYMPHGSQGLF
TQVGFNDPTQEDASQSHFGVAGPNPLQSQGLMNPLYSQPFTQYNTQPLNLQGPQQQQQPQ
QQQGGQSSQNQKLHYNG
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcagacggttgtaaacaatctctacgaaacggcttcacaacctgatacgggt
ggcgacgcttacaccttcctcgagttcaacacccaaggcgatgattacgattatcctgaa
ttccatgagctttcgcagccgatcaggtcttcggtttggccttctgcgtctgattcggtt
gctgacccttctgatcgtggtgccgatctccaagccgagagtggtggcactgtctctgtt
gcttctggtagtgcttccaagggtaaaggtggtggtggtagcagtagcggcggaagtagt
aaccaggctgcggtggatgccctagcggcgggaatgagtggtctgaactttgaggaaaca
ggtgatgatgagaattatgagtatgggaagggtgatttcacggagcatgcttgtcgatac
tgtggggttcagaacccggcttgtgttgtgcgttgcaatgttccttcttgtcgtaagtgg
ttttgtaactcgcggggcaacacttcggggtctcatatcgtcaatcacctggttcgagca
aagcacaaggaagtctgccttcataaagacagtcctcttggagaaaccatccttgagtgc
tataactgtggatgccgaaatgttttcctccttggatttatttcagccaagacagagagt
gtcgttgttcttctctgtagggaaccctgtctcagtgtcaatgcattgaaggacatgaac
tgggacttgagtcagtggtgtcctctcatcgatgatcgttgtttcttgcagtggcttgtt
aagattccatccgaacaagaacagttgagggcacgccaaattagtgctcaacagataaac
aaagtggaagaactttggaaaacaaaccctgatgccactcttgaagatcttgagaagcct
ggtgtggatgatgaacctcagcctgttgccttaaagtatgaggatgcttatcagtatcaa
aatgtgtttgcaccactcatcaagctggaagccgattatgataaaatgatgaaagaatcg
caaagcaaagacaatgtcacaatacgatgggatattgggcttaacaagaaacgcattgca
tactttgtcttcccaaaggaagataatgagtcaaggcttgtacctggtgatgagttgcga
cttcgttatccaggggatgcgactcatccagcatggcagtcagtggggcatgtgatcaag
ttaactgcacaagaagaagttgctcttgagctccgtgccagtcagggtgtacctgttgat
gtgaaccacagtttcagtgttgattttgtttggaagagtaccagctttgatcgaatgcag
ggagctatgaagacatttgctgtggatgaaacaagtgtcagtggatacatttaccatcac
ttgttgggacatgaagttgaggctcaggtggttcgtaacacactacctcgtcgttttggc
gctccaggacttccggaacttaatgcatctcaagtttttgctgtaaagagtgttcttcag
aagccagtaagtttaatacaagggccccctggtacgggcaaaacagtaacttctgctgcc
attgtttatcatatggcaaaacaaggccaaggccaggtcttggtttgtgctccaagtaac
gttgctgttgaccaactagctgagaagataagtgcaactgggctaaaggtagtcaggctt
tgtgctaaatcaagggaagctgtaagctctccagttgagcatttaacgctgcactatcag
gtccggcatcttgatacttctgaaaaaagtgaacttcataaattgcagcaactgaaagat
gaacaaggagaactatctagcagtgatgagaagaagtacaaagccttgaaacgggcaact
gaaagggagatatctcagagtgctgatgtcatctgttgcacatgtgttggtgccggagat
cctcgtttggcaaattttagattccgtcaggttcttattgatgaatccacccaatcgaca
gaacctgagtgtcttattcctctggtgcttggtgtaaaacaggtggttcttgttggggac
cattgccagcttggtccggtcattatgtgcaagaaagcagctcgtgctgggctagcgcaa
tctctgtttgagcgcctggtgctccttggtgtgaagcctttcagactgcaggtccaatac
cgtatgcatccagccctgtcagagttcccttctaacagcttctatgaaggaacccttcaa
aatggggttacgataaatgaaagacaatcatcgggaattgactttccttggcctgtgcca
aatcgccccatgttcttttatgttcagatgggacaagaggagatcagtgctagtgggact
tcttacttgaatagaacagaggctgcaaacgttgaaaaaattgtaaccacctttttaagg
agtggtgtcatccctagtcagattggagtaataacaccatatgaagggcagcgagcatac
attgtgaactacatgtcaagaaatggtgctcttaggcagcaactctataaggaaattgag
gttgcaagtgtggattccttccagggaagggagaaagactacattattttgtcttgtgta
aggagtaacgagcatcagggcatcggattccttaatgatccgcggaggctgaatgtggca
cttacacgagctcgttatggcattgttatcttggggaatcctaaagtcttaagcaaacaa
ccattgtggaatagtttattgacacactataaggaacatgaatgcttggtggaaggacct
ttgaataacttgaagcagagtatggttcagtttcaaaagccaaagaagatctacaatgac
cgaaggcttttcttcggcggtggcccagggattgttcctaatgacaattttgggtcggtt
gggtcgccaaacccaaatgctgatagaagaggcagtcgctctaaaggttcgtatatgcct
tttggtcctccgaatgggacacataaacctggagtgcatcccacagggtttcctgtacct
agaattccacttccaccatttcctggtggtccccattctcagccatatgcaattccaact
cgtggagctgttcatggaccaattggagctgttcctcaggtccctcaagctggaagcagg
ggttttggtgctgggcgtggtaatgcaggtggtcctataggcggtcatctctcgcatcag
caaggttcccagcaaagcatggggaatattggatctactttcaactttcctgctctggac
aatccaaacagtcagccgtctgcgggtggtaatttatcacaaactgggctaatgactcag
atgccagttcaagggttgagtcagactttccgtgatgggttttccattgggggcatgtct
caggatttcttgggcgatgatttcaaaagtcagggatctcatgttgcatataatgttgcg
gacttctccacacaggcttctcagagtggctatggcgttgattatgttacacaaggagca
caagctaggttcccaggaagtttcttgaaccagaattcgcaggctggatattctcatttg
ggtacaggaaatgatttaatttctcaggattatatgcctcatggatcacaaggcctattc
acacaggttgggtttaatgacccaacccaagaagatgcttcccagagccactttggtgtg
gcaggtcccaatccactccagtcacagggcttgatgaatcctctctattcccaacccttc
acccagtacaacactcagccactaaacctgcaaggtccacaacaacagcaacagccacag
cagcagcagggcggccagagctcgcaaaaccagaaactccactacaatggctga
DBGET
integrated database retrieval system
