Telopea speciosissima (New South Wales waratah): 122664572
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Entry
122664572 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122664572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122664572
03036 Chromosome and associated proteins [BR:
tss03036
]
122664572
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122664572
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122664572
mRNA degradation factors
5'-3' decay
Decapping complex
122664572
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122664572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122664572
NCBI-ProteinID:
XP_043716381
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All DBs
Position
6:complement(59248003..59273054)
Genome browser
AA seq
480 aa
AA seq
DB search
MNTRGRYPPGIGNGRGGNVYSNPNFQARNPQQQYVQRNIVQNQQQFQQQQWLRRNPMGND
SSYNEVEKAVQSEAVDSSSQDWKAHLKIPTPDTRYKTEDVTATKGNEFEDYFLKRELLMG
IYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL
VPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAR
KGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLHANRQILMFSATFPVMVKDFKDRF
LHKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLA
KKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF
PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaatacacgaggcaggtatccacccgggatcggcaacggtcgtggtggaaatgtatac
tcaaaccctaactttcaagctcgaaaccctcagcaacagtacgtgcagaggaatattgtc
caaaatcagcagcagtttcagcaacaacaatggcttagacggaatccgatgggaaacgat
tctagttataatgaggttgaaaaagcagtgcagtcagaagccgttgattctagttctcaa
gactggaaggcacacctcaagataccgacacctgatacacgctacaagacagaggatgtg
actgctactaaaggaaatgaatttgaggactattttctgaagcgtgaattgcttatggga
atttatgagaagggttttgaaaggccatctcccatccaggaagaaagtattccgattgcc
ttgactggtagcgatattcttgctagagctaaaaatggaacggggaaaacagctgcattt
tgcattcctgcactggaaaaaattgatcaagacaataatgttattcaagttgttatattg
gttccgacacgagaattggctttgcagacatcacaagtctgtaaggagcttgggaagcat
ttaaagattcaagtcatggttactacaggaggaactagcttaaaggatgatatcatgcgt
ttatatcaacctgtccatttgcttgttggaacacctggcagaatacttgatcttgcaaga
aaaggtgtttgcatcctgaaagattgctcaatgcttgttatggatgaggcggacaagctt
ttgtctccagaattccaaccttcagttgagcagctaattcgttttctgcatgcaaaccga
caaattttgatgttttcagctacatttcctgtaatggtgaaggattttaaagacagattt
ttacacaagccttacattatcaatctcatggacgagcttactctcaagggtataacacaa
tactatgcttttgtagaagaaagacaaaaggtccactgcctaaacactcttttctccaag
cttcaaatcaaccagtcaattatattttgcaactcagtgaatcgggtagaactgttggct
aagaagattacagagcttgggtattcttgcttctatattcatgctaagatgttgcaagat
catcgaaaccgcgtatttcatgacttcagaaatggtgcttgcaggaatcttgtttgtact
gatttatttacaagggggatagacattcaagcagtcaatgtcgtcattaactttgacttc
cccaagaactcagagacatacctgcatagggttggtcgatcgggtaggtttggacatctt
ggattagctgttaatttgatcacctatgaggaccgcttcaacttgtacaggattgaacaa
gagcttgggactgaaataaagcaaattcctccacaaatagaccaggctatttactgcagg
tga
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