KEGG   Telopea speciosissima (New South Wales waratah): 122664764
Entry
122664764         CDS       T07910                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    122664764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tss04121]
    122664764
   03036 Chromosome and associated proteins [BR:tss03036]
    122664764
Ubiquitin system [BR:tss04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122664764
Chromosome and associated proteins [BR:tss03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     122664764
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_1st Beta-prop_EIPR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_Aladin Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_EML_2 Beta-prop_WDR41 ANAPC4_WD40 EIF3I MIOS_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_Vps41
Other DBs
NCBI-GeneID: 122664764
NCBI-ProteinID: XP_043716671
LinkDB
Position
6:68190480..68204529
AA seq 342 aa
MENSTTQESLLGSENFFTYDSPYPIYAMAFSPSPSSDKTHRIAVGSFLEEYNNKVDIISF
DDETLTFRTDPNLSFDHPYPPTKLMFNPTGAKSLRKSSELLASSGDYLRLWEVRENSIEP
RSVFNNSKTSEFCAPLTSFDWNESEPRRIGTSSIDTTCTIWDVERGVVETQLIAHDKEVY
DIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL
MDSNKVVILDIRSPTMPVAELERHLGSVNAIAWAPQSCRHICSAGDDTQALIWELPTVAG
PSGIDPILSYSAGSEINQLQWSAAQPDWIAISFASKMQLLKV
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggagaattcgaccacccaagaatcccttctcggatcagaaaacttcttcacttacgac
tcgccgtacccaatctatgccatggccttctctccatctccctcctccgacaaaactcac
cgcatcgccgtcggtagcttcttggaagagtacaacaacaaagtagacatcatctccttc
gacgatgaaaccctaactttcagaaccgatcccaatctctccttcgaccacccttatccc
cctaccaagctcatgttcaacccaaccggtgccaaatccctccgaaaatcttccgagctc
ctcgcctcctctggggattatcttcgcctctgggaagttcgtgagaattcaattgagccc
agatcggtttttaacaacagcaagaccagcgagttctgcgcccctctgacttcgttcgat
tggaacgaatcggagccccggaggattggcacttcgagcatagataccacatgcacgatt
tgggatgttgaaagaggcgtcgttgaaacgcagcttatcgcgcatgataaggaggtctat
gacatcgcctggggtgaagctggagtgtttgcttcagtctccgctgatgggtcagttcgg
atttttgatttgagagataaggagcactctacgattatctacgaaagtcctcagcccgat
accccgttgcttagattggcgtggaacaagcaggacttgaggtacatggccaccatctta
atggatagcaacaaggtggtgattttggatattcgttcgcccaccatgccggtagctgag
ttggagaggcacctggggagcgtgaatgcgattgcgtgggcacctcagagttgccgccac
atctgctctgcgggggatgatacgcaggctctcatttgggagctgcccacagttgccggt
ccaagtggtattgatcccattctgtcatattcggcaggttcagaaattaaccaactgcag
tggtcggctgcacagcctgactggatcgcaatttcgttcgcctctaaaatgcagctgctg
aaggtttga

DBGET integrated database retrieval system