Telopea speciosissima (New South Wales waratah): 122665237
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Entry
122665237 CDS
T07910
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122665237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122665237
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122665237
U7-dependent histone pre-mRNA processing factors
122665237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
122665237
NCBI-ProteinID:
XP_043717262
LinkDB
All DBs
Position
6:complement(62551256..62575359)
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AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYSESPLCYLLSIDGFNFLVDCGWNDLFDTNLLQPLAKVSSTIDAILL
SHSDTLHLGALPYAMKHLGLSAPVYSTEPVYRLGLLTMYDHYLSRKQVSEFDLFTLDDID
SAFQNVTKLTYSQNHHLTGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDAILKTLRADGNVLLPVDTAG
RVLELILMLEQHWAQHHLTYPIFFLTYVASSTIEYVKSFLEWMSDSIGKSFEHTRDNAFL
LRHVTLLINKNDLEKMPDGPKIVLASMASLEVGFSHNIFVEWATDNKNLVLFTERGQFAT
LARMLQADPPPKAVKVTMSKRVPLVGEELRAYEEEQNRIKKEEALKASLSKEEDLKPSHE
SDANLGDPMVIDANNTRVNSDVTGPHGGGHQDIFIDGFVPPSTSVSPMFPFFENFSEWDD
FGEVINPDDYVLKEEDMDQISMRVGGDLDGKLDEGSANLILDSKPSKVVSNELTVQVKCS
LVYMDFEGRSDGRSIKSILAHVAPLKLVLVHGTAEATEHLKQHCLKHVCPHVYAPQIGEA
IDVTSDLCAYKVQLSERLMSNVLFKKLGDYEIAWIDAEVGKTDSGMLSLLPLSTPPPHKS
VLVGDLKLADFKQFLASKGVQVEFAGGALRCGEYVTLRKIGDATQKGGVTSTQQVVLEGP
LTEEYYKIREYLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcggttcaggtcactccactctgtggagtctacagcgaaagtcctctctgt
tatctgctctccattgatgggtttaacttcctcgtcgactgcggatggaatgatctcttc
gacaccaatcttcttcaaccccttgccaaggtatcttcgacaatagatgccattttacta
tcacattcagatacacttcatcttggtgctttgccatatgcaatgaaacacctcggactt
tctgctccagtttactcaacagagcctgtgtacagactaggcctcttgacaatgtatgat
cattatctttcacgaaagcaagtatcagaatttgacttgtttactctagacgatattgat
tccgctttccaaaatgtgaccaaattgacatattctcagaaccatcatctaactggcaaa
ggtgaaggaattgttattgcccctcatgtggctgggcatcttttgggaggtacagtttgg
aagatcacaaaagatggggaagatgtaatatatgctgttgacttcaaccatcgcaaggaa
aggcacttgaatggaactgtcctggaatcttttgttcgaccagctgttctgataacagat
gcctacaatgccttgaacaatcagccttctagacgccaaagggatcaagagtttcttgat
gccatactgaagactctaagggcagatggaaatgtactacttcctgttgatacagctgga
cgagtcttggaacttattttgatgctggaacagcattgggcacagcatcacctgacctat
cccatcttttttctcacgtatgttgcatcaagcacaattgagtatgttaaaagcttcctt
gagtggatgagtgattctataggaaagtccttcgaacacacacgagataatgcttttctt
ttgaggcacgtcaccctcctaatcaacaagaatgatcttgagaaaatgccagatggtcca
aagattgttctagcatcaatggccagtttggaagtgggtttctctcacaacatatttgtc
gaatgggctactgacaacaagaatctcgtgctttttacagaaagaggccagtttgcgacg
ttagcacgcatgcttcaagcagatccaccacctaaagcagtaaaggtcaccatgagcaag
agggttcctttggttggggaggagttacgagcttatgaagaagaacaaaaccgaattaaa
aaagaggaagctctaaaagctagtcttagcaaggaagaggatttaaaaccatctcatgag
tctgatgctaatttgggtgatccaatggtcattgatgcaaacaatacccgagtcaattca
gatgtgactggtccacatggtggtggacaccaagacatcttcattgatggatttgttcct
ccatccactagtgtttccccgatgtttcccttctttgagaacttttctgaatgggatgat
tttggggaggtcattaatcctgatgattacgtacttaaggaagaagacatggaccaaata
tcaatgcgggttggtggagatttggatgggaaacttgatgaagggtctgctaacttgata
cttgattcaaagccttcaaaagttgtttcaaatgaattgactgtgcaagtgaagtgttct
cttgtttacatggactttgagggtcgttctgatggccgttcaatcaaatcaattcttgca
catgtggccccattgaagcttgttttggtgcatggaacagcagaggctacagagcatttg
aagcaacattgcttgaaacatgtttgcccccatgtttatgcacctcaaattggggaagca
attgatgtcacctcagatttatgtgcatacaaggtgcaactttctgagaggctgatgagt
aatgtgctcttcaagaagctgggggactatgagattgcttggattgacgctgaagtaggg
aagacagatagtggcatgctgtcgctgcttcctctttcaaccccacctccacataaatct
gtccttgttggtgatttaaagctggcagatttcaagcagtttcttgcaagcaagggtgta
caggtagaatttgcagggggtgccttaagatgtggggagtatgtgacactgcggaagatt
ggagatgccacccagaagggtggagttactagcactcagcaagtagtccttgagggcccc
ttaactgaagagtattacaagatccgtgaatatctctattcgcagttctatttgctgtag
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