Telopea speciosissima (New South Wales waratah): 122666239
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Entry
122666239 CDS
T07910
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tss04131
]
122666239
Membrane trafficking [BR:
tss04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
122666239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
122666239
NCBI-ProteinID:
XP_043718332
LinkDB
All DBs
Position
6:complement(63890821..63926115)
Genome browser
AA seq
1125 aa
AA seq
DB search
MYMAYGWPQVIPLEVGLCPASEHIVYLKIINRLLLVVAPTHLELWSCFQHKVRLGKYKRD
SDSIQREGENSQAVWSPDAKLIAVLTSSFFLHIFKVQNSEKRLQLGGKQPSGLFLANISL
LLSEEVPFSDKNLTMSNIVCDNKHILLGLSNGSLHLISWKGEFCGAFRLHSHPLPCNPVT
EPVHSLENGPCSEGALVALTSNHNSTSSSAVIQLDLALSLRLLVVLYSDGQVALCSMSKK
GLKQAESIEAETWLGSGDAVCVSVASDQQILAIGTRRGVVELYDLAEPASLFRTVSLYDW
GYSVEDTGPVSCIAWTPDNSAFAIGWKLRGLTVWSVSGCRLMCTIRQIGISSVSSPMVKP
NQDFKYEPMMGGTSLLQWDEYGYRLYAIEEGSSERILSFSFGKCCLNRGVSGTTYSRQVI
YGEDRLLLVQSEDTDELKMLHLNLPVSYISQNWPVLHVVTSNDGMYLAVAGIHGLILYDL
RNKKWRVFGDITQEQKIQCKGLLWLGKIVVVCSYIDSSNTYELLFYPRYHLDQSSLLCRK
SLLGKPMVMDVFQDYMLVTYRPFDVHIFHVKISGELSPSNTPTLELSTVRELSIMTAKSH
PAAMRFIPDQLPKECISKNLLSSSSDSLVSQPSRCLVLRTNGELSLLDLDDGRERELTDS
VELFWVTCGQSDEKANLIEEVAWLDYGHRGMQVWYPSPGVDAFKQEDFLQLDPELEFDRE
VYPLGLLSNAGIVVGVSQRMSFSASTEFPCFEPSPQAQTILHCLLRHLLQRDKKEEALRL
ACLSAEKPHFSHCLEWLLFTVFDAEISRKNANKNQNSVPKNATSVSLLEKTCDLIRNFPE
YLDVVVSVARKTDGRHWADLFATAGRSTELFEECFQRRWYRTGACYILVIAKLEGPAVSQ
YCALRLLQATLDESLYELAGELVRFLLRSGREYEHATSDSDKLSPRFLGYFLFRPSYKKQ
SLDSRSPSFKEQSAHVTSVKNILENHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYG
SARLESFASGLELIGQKLQMCNLQSRLDAEFLLAHMCSVKFKEWIVILATLLRRSEVLFD
LFRHDMQLWKAYLTTLQSQPAFSEYHDLLKVLEEELSSVPRSEEK
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcttacggatggcctcaggtcatccctcttgaagttggcctctgtccagct
tccgagcatatcgtctatctcaaaatcatcaatcgcttgttgctagttgtggctcccact
cacctcgaactatggagctgttttcagcataaggtgaggttagggaagtacaagagagat
tcggattcaattcaaagggagggggagaactcgcaggcggtgtggagccccgacgcgaaa
ttgatcgctgttcttacttcttcattttttcttcacatttttaaggtccagaattcagaa
aaaagactacaacttggaggaaagcaaccatcgggtttatttcttgctaacatttctcta
cttcttagtgaggaggtacccttttcagataaaaacttaaccatgagcaatattgtatgt
gacaataaacacatactgcttggactttcaaatgggtctttacatcttatatcctggaag
ggggagttttgtggggcctttcgactccattcccatccacttccttgcaatccagttaca
gaaccagtgcattctctggaaaatggtccttgttctgaaggggcattggtagctttgaca
tctaatcataattctaccagcagttctgctgttattcagctggatcttgccttgtcattg
aggttactagttgtgctatattctgatgggcaagttgctttatgttctatgagtaagaaa
ggtttgaagcaagctgaatccattgaagctgaaacgtggttgggttcgggagatgctgtc
tgcgtctcagtagcatcagatcaacaaatccttgccattggtaccagaagaggtgttgtt
gagttatatgacctggcagaacctgcatccctttttcgcactgtatctttatatgactgg
ggatattctgtagaagatactggtcctgtcagttgtatagcatggacacctgacaactct
gcatttgcaattggatggaaattgagaggacttacagtttggtctgtatctggttgtcgt
ttgatgtgtacaatccgtcaaattggtattagttctgtatcttctccaatggttaaacca
aaccaggattttaaatatgaacctatgatgggtggaacctcactgttgcagtgggatgaa
tatggatataggctttatgctattgaggaagggtcttcagagaggattctttcattttct
tttggaaaatgttgccttaacagaggagtttctgggacaacatacagtcgtcaagtgatt
tatggtgaagatcgattgctgcttgtgcagtctgaagatactgatgaacttaagatgcta
catcttaaccttccagtttcttatatctcccaaaactggccagttttacatgttgtcact
agcaacgatggaatgtacttagccgttgctggcatccatggcttgatcttatatgatcta
cgtaataaaaaatggcgtgtttttggagatattacccaggaacaaaaaatacagtgtaaa
gggttgttatggttggggaaaattgttgttgtttgtagttacattgattcttctaacact
tatgaattgctcttttatccaagatatcaccttgatcagagctccttactttgtcgcaaa
tcgttacttggcaagccaatggtcatggatgtctttcaagattatatgcttgtaacttat
cgtccattcgatgtgcatattttccacgtgaagatttctggtgaattatcaccttctaac
actcccactttagagctttctacagtacgagagctttcaatcatgactgcaaagagccat
cctgctgcgatgcgcttcattccagatcagcttccaaaagaatgcatctcgaagaacctt
ctttcatcttcatcagattccttagttagtcagccttctagatgcctggtattacgaaca
aatggggaactttcactacttgatttggatgacgggcgtgagcgggagctcacagattca
gttgaattgttttgggttacttgtggtcaatctgatgagaaagcaaacctcattgaggaa
gttgcttggttagattatggtcaccgaggaatgcaggtatggtatccatctcctggtgtt
gatgcctttaagcaggaggatttcttgcagctggaccctgagctggaatttgatcgtgag
gtctaccctctagggcttctttcaaatgctgggattgtagttggtgtttcccagagaatg
tcattttcagcatccacagagtttccgtgttttgagccttctcctcaagctcaaactatt
ttgcactgtctactgcgacaccttcttcagagagataaaaaagaggaagctttacggtta
gcatgtttatctgctgaaaagcctcatttttcccactgtctggagtggctactttttacc
gtgtttgatgcagagatatcaaggaaaaatgcaaacaagaaccagaactcagttcctaaa
aatgctacaagtgtctctcttttggagaagacctgtgatttgatcagaaattttcctgaa
tatcttgatgttgttgtaagtgtggctagaaaaactgatgggcgacattgggcagatttg
tttgctactgctggaagatcaacggagttgtttgaggaatgcttccagcggagatggtac
cgcactggagcttgctatatactagtgatcgccaaacttgaaggacctgctgtgagtcaa
tactgtgctttgcgtttattgcaggcaacacttgatgaatctttatatgaacttgctggg
gagctggtgaggtttttgttgagatctggaagggaatatgaacatgcaacttctgattct
gacaaactgtctcccagatttttgggttatttccttttccgccccagttacaagaagcaa
tccttggactcaagaagcccctcgttcaaagagcagagtgcacatgttacctctgttaaa
aacatcttagaaaaccatgcaagctacctcatgtcaggaaaagaactttccaagcttgtt
gcatttgtaaaaggcacgcagtttgatctagtggaatatcttcagcgggagcgttatgga
tctgctcgcttagagagttttgcttcaggtcttgagctaattgggcaaaagcttcaaatg
tgcaatttgcagagccgattagatgcagaattccttttggcacatatgtgctctgtcaag
ttcaaagagtggatagtcatcctggctacccttttaagacgttcagaggttctttttgat
cttttccggcatgatatgcaattatggaaagcatacttgacaacgctacagtcgcaacct
gcattttccgaatatcatgatttgctgaaagtgttagaagaagaactctcatctgtgcca
agatccgaggagaaataa
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