Telopea speciosissima (New South Wales waratah): 122667159
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Entry
122667159 CDS
T07910
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122667159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122667159
03019 Messenger RNA biogenesis [BR:
tss03019
]
122667159
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122667159
RNA polymerase I system
122667159
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122667159
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW6_SPT51-2
KOW4_SPT5
Spt5-NGN
KOW
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
ProQ_C
Motif
Other DBs
NCBI-GeneID:
122667159
NCBI-ProteinID:
XP_043719311
LinkDB
All DBs
Position
7:complement(1011184..1029441)
Genome browser
AA seq
1030 aa
AA seq
DB search
MPRRRVDDELDPEEEEEEEEELEDKEDDDDGGHVKKRRRSDFIDDAAVEDDDEEEEDDED
DDFVDHRGGRKRRKAGTEFFDIEAAVDEDEEEEEDAEEDDFIVDGGAELPDEEEVRRIHR
RPLPTEEDQEEDYEALERSIQARYARSSDNDYDEEATDVEQQALLPSVKDPKLWMIKCAI
GHEREAAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNLYAQK
VMLVPIKEMTDVLSVESKAVDLSRDAWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRI
DLQALANKLEGREVVKKKAFVPPPRFINIEEAREMHIRVERRRDPVTGDYFENIEGMMFK
DGFLYKTVSMKSISSQNIQPTFDELEKFQKPGEDGDGDMSSLSTLFANRKKGHFMKGDAV
IVVKGDLKNLMGWVEKVDEENVHIRPKMKGLPTTLAVNEKELCKYFKPGDHVKVVSGAQE
GATGMVVKVDGHVLYIVSDTTKEDIRVFADNVVESSEVTAGVTKIGDYELHDLVLLDNMS
FGVIIRVESEAFQVLKGIPERPEVVLVKLREIKSKIERKSNAQDRSKNTVSVKDVVKIVE
GPCKGKQGPVEHICRGILFIYDRHHLEHAGYICAKSQSCVVVGGSRSTGDKNGDYLPRFP
GLRASPHVTQSPKRPPRGPPVDSGGRHRGGRGHDSLVGSTIKIRLGPFKGYRGRVVDVKG
QSVRVELESQMKVVTVNRNQISDTAAVATPFRETSRYGLGSETPMHPSRTPLHPYMTPMR
DPGATPIHDGMRTPMRDRAWNPYAPMSPARDNWEDGNPASWGTSPQYQPGSPPRRPYEAP
TPGSGWANTPGGNYSEAGTPRESSPAYASAPSPYLPSTPGGQPMTPSSASYLPGTPGGQP
MTPGSGGLDIMSPTVGGEGEGPWFLPDVLVNVRKSGEDAAIGVVHEVLPDGSCKVALGST
GNGEMVTALPNEMEMVVPRKSDKIKIMSGAQRGATGKLIGIDGTDGIVKVDDTLDVKILD
MVILAKLARS
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaggagagtcgacgatgaactcgaccctgaagaagaggaggaagaagaagaa
gaacttgaagacaaagaagacgacgacgacggtggtcatgtcaagaagcgtcggagatcc
gatttcattgatgatgcagccgttgaagacgatgacgaggaagaagaagatgatgaagat
gacgactttgttgatcatcgtggtggtcgcaagcgcaggaaggctgggaccgaatttttc
gacattgaagccgctgttgatgaggacgaagaagaggaggaggatgctgaagaagacgat
tttatagtagatggcggggctgagttacctgatgaagaagaagtgaggaggatacatcgt
cgtcctttgcccacagaggaggaccaagaagaagattatgaagctcttgagagaagtatt
caagcaaggtatgctagatctagtgataatgattatgatgaggaggccacagatgttgaa
caacaggctcttctgccatcagtcaaggatccaaaactttggatgataaagtgtgcgatt
ggtcatgagagagaggcagctgtctgcctgatgcagaagtacattgataaaggatctgaa
ttgcagattaggtctgcaattgcccttgatcatcttaaaaactacatatatgtggaagca
gacaaagaagcccatgttagagaggcttgcaagggtctgcgcaatctatatgctcaaaaa
gtaatgcttgttccaataaaagaaatgactgatgtactctcagttgaaagcaaagctgta
gacctatctagagatgcttgggtgcggatgaagattggaacgtataaaggagaccttgca
aaagttgtggatgtggacaatgtgcggcagagagtgacagtgaagctaataccaaggatt
gatttacaggctcttgctaataaattggaaggtagggaagtcgtgaagaagaaggcattt
gtacctcctccacgtttcataaatatagaggaggcaagggagatgcatatccgtgttgag
cgtaggcgggatccagtcactggtgattactttgagaatattgagggcatgatgtttaaa
gatggttttctgtataaaacagtatcgatgaaatctattagctcgcagaacattcaacca
acttttgatgaactagagaaatttcagaagccaggggaagatggagacggcgacatgagt
agtttgtctactttatttgcaaacagaaagaaaggtcatttcatgaagggtgatgcagtt
attgtggtgaagggagatttgaaaaatttgatgggttgggttgagaaagtagatgaagaa
aatgttcatattagaccgaaaatgaagggcttgccgacaactcttgctgtaaatgagaaa
gaactttgcaagtacttcaaaccaggggatcatgtaaaagtcgtttctggtgctcaggaa
ggtgcaactggtatggttgttaaggttgatggccatgtcctttacattgtttctgataca
accaaagaagatatccgtgtatttgcggacaatgttgtggagagttctgaagtaactgct
ggtgttaccaaaattggggactatgagttacatgatcttgtgctgctcgataatatgagc
tttggtgtaattattcgtgtagaaagtgaagctttccaggtgcttaagggcattccagag
agacctgaggttgttcttgttaagttaagagagattaaaagcaaaattgaaaggaaatct
aatgctcaagatcgctctaagaacaccgtgtctgtgaaagatgttgtaaagattgtggag
ggtccttgcaaaggaaagcaaggtcctgtggaacacatatgtagaggaattttattcatt
tatgaccgccatcacctcgagcatgctggttatatttgtgctaagtctcagtcttgtgta
gttgttggtgggtctcgttctactggtgataaaaatggtgattacttgcctagatttcct
ggtctcagagcctcacctcatgtcacccagtccccaaaaagaccacctagaggacctcca
gttgactctggaggaagacacagaggtggaagaggtcatgattctttggttggtagtact
ataaaaattcgactgggccccttcaagggataccgtgggcgtgttgtagatgtcaagggt
caatcagtccgggttgaattggagtcccaaatgaaggttgtcacagttaaccgtaatcag
atttctgatactgcggctgttgcaacccccttccgtgaaacatctcggtatggcctggga
agtgagacacccatgcatccatcacgaactccactacatccatatatgactcctatgaga
gatccaggagcaacaccaattcatgatggcatgcgaacgcccatgagggatcgagcttgg
aatccttatgcaccaatgagtccagcaagggataattgggaggacggaaatcctgcttcc
tggggaaccagtccacagtatcagccaggaagtcctcctcgtcggccttatgaagcacca
actcctggttcaggttgggccaacactcctggtggtaattatagtgaagctggaacccca
agggaaagcagcccagcatatgcaagtgctccgagcccttacttgccctcaactcctggt
gggcagccaatgactccaagttctgcatcatacttacctggcactcccggagggcaacca
atgactcctggaagtggtggtctggatattatgtctccaacagtaggtggtgagggtgaa
gggccgtggttcctgcctgatgtgttggtcaatgttagaaagtcaggagaggatgctgcc
attggggttgtacatgaagtgcttccggatggttcttgcaaggtcgcccttggatcgact
ggtaatggagagatggtcactgctcttccaaatgaaatggagatggtggtgcctaggaaa
tcagataagataaagatcatgagtggtgcccaacgtggtgctactgggaagctgataggt
attgatggtactgatgggatagtcaaagtggatgatactctcgatgttaagattttggat
atggtcattttggccaagttagcgcgatcttaa
DBGET
integrated database retrieval system
