Telopea speciosissima (New South Wales waratah): 122667338
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Entry
122667338 CDS
T07910
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03440
Homologous recombination
tss03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122667338
03450 Non-homologous end-joining
122667338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tss03032
]
122667338
03400 DNA repair and recombination proteins [BR:
tss03400
]
122667338
DNA replication proteins [BR:
tss03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
122667338
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
122667338
BRCA1-C complex
122667338
NHEJ (non-homologous end-joining)
MRX complex
122667338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SMC_N
Rad50_zn_hook
SbcC_Walker_B
AAA_29
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
122667338
NCBI-ProteinID:
XP_043719530
LinkDB
All DBs
Position
7:complement(27958087..28024490)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTIDKMLIKGIRSFDPENKHVITFFTPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGQSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGISKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRENIAQNEESSESLKT
QMHELEKNVQSLEAKIHHAEAMLEELKNLQDQISKKTGERNTLFKQEQDQYAALEEENED
TDEELQEWQTKFEERIALLETKIGKLEREMHDTEERSSFLVDTSTKSNQEIGKLQNEAEV
FISLRQKQDLTIQRIFEKHNLGSLPSAPFSYEVSCNLINRLKMRLMDLERDLLDKKKSNE
VELKALWDSYDAANKHFNGLELQKHNKIEAKEGILSSIKKTENARDLEEQQLFNFNLSDI
DEREKTLQMEYERKGQEFKERKFEENIQQLLYEIRNLDKKIKTLNQEKDFMARDSDNRVR
LNVKKEELETSRKKHRKIIDEHKDKIRRVLKGRLPLDKDLKKEVTQALEALKKEFSDLES
KYLEADKEVKVGKAKIEDVESSLSKFQKEMVAKKKFIESKLQFLFQQSFDIDSFPQVVNE
AKEKRDIKKSKYNIADGMRQMFDPFERVARAHHVCPCCERSFSPEEEDEFVKKQRVKATS
SAEHMKLLAGESSNADSLFQQLDKLRMVYEEYIKLGKETIPQAQKNLQQLREDLDQKSQA
LDDVVGVLAHLKAEKDSVETLVEPVGSADTLFHEMQNLQKVVDDLEYALDARGEGVKSVE
EMQLQLNTLQSRRDSLDYEVQKLRDEKDSMSSDLSNVEMRWRNAREEKLKAANILNSIKK
AEEELEHLVEEKNQVDLEEKHLGEALIISLKEKDRLYHEYEAMKTKLDYEYDSLAELKRS
YNTEVEKLLEYASQIKEYNDSKKGERLKELQEKLLVYESQLQNCKARKHEISVELDKSKE
LRRSQEKLKRNIDDNLKYRKTKAELDGCTHEIESLEDRMLKIGGFSTFEANKKKYVKERE
RLLEELNKCRGTLSVYQKNISDHKAELKQAKYNDIDKRYFNQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSESCGTRSYSYRVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDCPNAESLAAALL
RIMEDRKNQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDEFQHSIIEAQAIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccattgataaaatgctgatcaaaggtatccgtagtttcgacccggagaacaag
catgtcatcaccttcttcacacccctaaccctaatcgttggccccaatggcgccggcaaa
acgaccataatcgaatgcttgaagctttcttgcacgggggagttgcctcccaatgcgagg
tctggtcagagtttcatccacgaccccaaggttgctggggagacggaaacgaaagctcag
attaaacttcgatttaagacggcggctggaaaggatgtggtgtgcgtaaggtcgttccag
ttgactcagaaggcgtctaagatggagtacaaggcaattgagagcgttttacagactatt
aacccgcataccggggagaaagtttgcctcagctatagatgtgctgacatggatagggaa
attcctgctctaatgggtatttcaaaggccatcttggaaaatgttatatttgtgcatcaa
gacgaggctaactggccattgcaagacccttcaacattaaagaagaagtttgatgatatc
ttctctgctactcgatacacaaaagcattggaagtcataaaaaaacttcacaaggagcag
gctcaagagataaaaacgtacaagctgaagctggagaatcttcaaaccttgaaagatgct
gcatataagcttcgagaaaacattgctcagaatgaagaaagttcggagtctctaaaaact
caaatgcatgagctcgagaagaatgtacaatctttggaggctaagatccatcatgcagaa
gcaatgctagaagagttgaagaacctacaagatcagatatcaaaaaaaactggtgaaaga
aacacgttatttaagcaagagcaggatcaatatgctgctcttgaggaggaaaatgaagat
actgatgaagaattacaggaatggcaaaccaagtttgaagaaaggattgcactattagaa
acaaaaattggcaagttagaaagagagatgcatgacacagaggaaagaagttcttttctt
gtggacacaagtactaaatccaaccaggagatcggcaaacttcaaaatgaagctgaggtt
tttatatcattgaggcaaaagcaggatttaaccattcaaaggatatttgaaaagcataat
ttagggtctcttccaagtgcaccttttagctatgaagtttcttgcaacctcataaatcga
ttaaagatgaggttgatggatcttgagagggatttgctggataaaaagaaatcaaatgaa
gtagaactcaaggcattgtgggacagttatgatgctgcaaataaacatttcaatggatta
gaacttcagaagcataataaaatagaagccaaggaaggaatattgagttccattaagaaa
acggagaatgcccgggatctggaggaacaacaacttttcaactttaatctttctgacatc
gatgaaagggaaaagacactgcaaatggagtatgaaagaaagggacaggaatttaaggaa
agaaaatttgaggaaaacattcagcagttgttgtatgaaatacgtaacttagacaaaaaa
attaaaactctcaatcaggagaaggacttcatggctcgtgattcggacaatagagttaga
ctgaatgtcaagaaggaggaattggaaacttccagaaaaaaacataggaagataattgat
gaacacaaggataaaatccggagagtgctgaaaggaaggcttcctttggacaaggatctg
aagaaagaagtcactcaagccctagaagccctcaaaaaggagttcagtgatttggaatca
aaataccttgaagcagataaggaggtgaaagtggggaaagcaaaaatagaagatgttgaa
agttccctatccaagtttcaaaaggaaatggttgcgaagaaaaagtttattgagtcaaaa
ctccagtttttgtttcagcagtcttttgatattgattctttccctcaagttgtcaatgaa
gctaaggagaaaagagacattaagaaaagtaaatacaacattgcagatggcatgaggcaa
atgtttgatccttttgaaagagttgcgcgtgcacatcatgtttgtccctgctgtgagcga
tctttctcccctgaagaggaggatgagtttgttaagaagcaaagggttaaagcaacaagt
tcagcagagcatatgaagcttttggcaggggagtcatcaaatgctgattcacttttccag
caattagacaagcttcgaatggtgtatgaggaatacattaaacttggcaaggaaaccatc
cctcaggcacagaaaaatttgcaacaactaagagaagatttggaccagaagtctcaggca
ctcgatgatgttgtgggcgttttagctcatcttaaagcggagaaggattcagtagagact
ttggtagaaccagtaggatctgctgacactcttttccatgagatgcaaaatttgcaaaaa
gtagttgatgatttagaatatgcacttgatgctcgaggagaaggtgtaaaatctgtagag
gaaatgcagttgcagttgaatacattgcaaagcaggagggatagtctggactatgaagtg
cagaagttaagggatgagaaggattccatgagcagtgatttgtcaaatgttgaaatgcgg
tggagaaatgcaagggaagagaaactgaaagcagctaacattttgaatagcattaaaaaa
gcagaagaggaactagaacatttggtggaggaaaagaatcaagtagaccttgaagagaag
catttgggcgaggcactcattatttcattgaaggagaaagatagattgtatcatgaatat
gaggcaatgaaaacaaaacttgactatgaatatgattcactggccgaactgaagagaagt
tataataccgaagtagagaagcttctggaatatgcttcccagattaaagagtataatgat
tcaaagaaaggggagaggctgaaggagttgcaagaaaaattattggtatatgagtctcaa
cttcaaaattgtaaggccagaaaacatgaaatttctgttgaattggacaaaagtaaagag
ttgaggcggagtcaagagaaattaaaacgaaatattgatgacaacttgaagtatcggaag
acaaaggctgaactggatggatgtacacatgaaattgaatcacttgaagatagaatgcta
aaaattggtggattttccacctttgaagctaacaaaaagaagtatgtgaaggaaagagaa
agacttcttgaagagttgaacaagtgtcgtggaactctgtctgtatatcagaagaacatt
tcagatcataaagctgagcttaaacaagctaaatacaatgacattgacaagcgctacttt
aatcagctgattcagcttaagacaactgagatggcgaacaaggacctggacagatactac
aatgctcttgataaagccttgatgcgcttccacaccatgaagatggaggaaataaataaa
attattagggagctgtggcaacaaacttacaggggtcaggatatagattatataagtatt
cattccgattctgaaagttgtgggactcgatcttatagttaccgggttctaatgcaaact
ggtgatactgagctggaaatgcgaggaagatgtagtgctggtcagaaggtccttgcttcg
cttataatacggttagcattagctgagacgttttgtctcaactgtggaatactagcactc
gacgaaccaacaacaaacttggattgcccaaatgctgagagccttgcagcagctctcctg
agaatcatggaggatagaaaaaaccaggagaatttccaactcatagtaattactcatgat
gagcggtttgctcaactgattggtcaacgccagcatgcagaacgatattatcgtgttgcg
aaggatgaatttcagcatagtattattgaagcccaggcgatatttgactga
DBGET
integrated database retrieval system
