Telopea speciosissima (New South Wales waratah): 122668953
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Entry
122668953 CDS
T07910
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122668953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tss03032
]
122668953
03400 DNA repair and recombination proteins [BR:
tss03400
]
122668953
DNA replication proteins [BR:
tss03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
122668953
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122668953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
BRCT_3
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
122668953
NCBI-ProteinID:
XP_043721481
LinkDB
All DBs
Position
7:complement(9991235..10011796)
Genome browser
AA seq
971 aa
AA seq
DB search
MAFKGANIFMSRNLVPSEIFDTLHDSLKQNGAEVSLCCDPSRTGPNDYHIISSPEHEKFE
DLRAKGCNLLGPQCVLSCAKENRTLPKQGFTCCLAMDGVKVLASGFEKDEKVKIEKLVTA
MGGVFQARASMDVNFVIVKNVLAAKYKWASNVLKKPSVNISWLNQCWNEHRVVPQEPYRI
PPFFGLTICATRIPADQRKELEKLIIQNGGKYSADLTKNCTHLVADAPEGDKYKVARKWD
HIHIVTRKWVDQSIARRACLGEELYPVHGVSNSSSNTMKGGLKRQHDQDKCNANSPSVPS
SAIANANLLPSSMTLDPDLEMSISQNMSSTFSDATIFTKEETNEEPRLQPENGTKFDGCV
ADDSQTEDADLYLSDCRILLVGFQASEMRKLVHMVRKGGGSRFMSFNEKLTHIVVGTPSE
SEKKEVRGYAALGVIYAVRTSWLEDCDREKKEVPVSQTHVASELLLPKVGNSGVKQGKSS
IASFGMPTVKVVGDMDFESRISLEKNIGGNPEKNIKAANFVEVAMGSFQKSLFSALKDDN
KVRQKLQQDSYTTTVQDGKSSNIFKGRIFRFSSSFPPERRAEIVEWIKQGGGALVDDQVQ
NVHFTVECHGVMRRPADTSQCTIVSSHWIRSCVEDGCMVDVDSHLLYSPLPCQIPLPGLG
GFRFCVSQYEEKDRVLLRNLCFVLGAKFTEKLSKKVTHLICKFSSGPKYEAACKWGIQAV
TSEWISECVLQDKIIALDQFRPKEVTAQDREAGVCTQSQYPAQVARMISGDVLSHLPSQS
QVMTKTPTHVIGNESESFQSLSGEAKHSLVSIKRARLVDDDSQKDILAGVVRPTGRMESM
RNRLSEANEEVSHAVSDVAAAIEDLLAQTSKIQDMKSPGGFRCEQSLFSPDHSILGQDHL
EPRPAFGISNSWLNRNEKQDDLCTPSGQGAKEGTYDCFSETQTESQVVGYEEDLSGRQMI
IDRVRTQSSMI
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaagggcgcgaacatcttcatgtctcggaacctcgttccgtctgaaatcttc
gatacccttcacgattctctcaagcagaacggtgccgaggtttctctctgctgcgatccc
tcgcgaaccggtcctaacgattaccatatcatctcctctcccgaacatgagaaatttgag
gatcttagagccaagggctgtaatttacttggtcctcaatgtgtactttcgtgtgcaaaa
gaaaacagaactttgccaaaacaaggttttacctgttgccttgcaatggatggtgttaaa
gtacttgcttctggatttgagaaggacgagaaggttaagattgaaaagttagtgactgcg
atgggaggagtctttcaagctagggcctccatggatgttaactttgttattgtgaagaac
gttttagctgcgaagtacaagtgggcatcaaatgttcttaagaaaccaagtgttaacatt
agctggttgaatcagtgctggaatgaacaccgagttgtgcctcaggagccatacagaatt
cctcctttttttggattgaccatttgtgcaacgagaattccagcagatcagcggaaggag
cttgaaaagcttatcatacagaatggcgggaagtactctgctgatcttaccaagaattgc
acacatttagttgctgatgctcctgaaggtgacaagtacaaggtcgctagaaaatgggat
cacattcatattgtgactcggaaatgggttgatcagtctattgctagaagagcatgtctg
ggtgaggagttgtatcctgttcacggagtttctaattcatcaagtaataccatgaagggt
ggtctaaagcgacagcatgaccaagataagtgcaatgcaaattctccatcagtgccatca
tctgcaattgcaaatgcaaatttgcttccatcttccatgactctggatcctgatctggaa
atgagcatttctcagaatatgtcttctacattttctgatgccactatctttaccaaagag
gagacaaatgaagaacccagattgcagcctgaaaatggcacaaaatttgatggctgtgtt
gctgatgattcacaaactgaagatgctgatttgtacttgtcagattgcagaattttactt
gttggtttccaggcttctgaaatgcgtaaactagtacatatggtgcgtaaaggtgggggc
tcccggtttatgtcattcaatgagaagttgacacatatagttgtgggaacaccttcagag
agcgaaaagaaggaggtaaggggctatgcagctttgggtgtcatttatgcggttagaacc
agctggctggaagattgtgaccgagaaaaaaaagaagttcctgtgtcccagacgcatgtt
gcttctgaattacttttaccaaaagtaggcaattctggtgtaaagcaaggtaaaagctcc
attgcatcttttggcatgccaactgttaaggtagtgggggatatggacttcgaatctcgg
atctcattggagaaaaacataggaggaaatccagaaaaaaatatcaaagcggccaatttt
gtagaagtggctatgggatccttccagaaaagcctgttttctgctttaaaggatgacaat
aaggttcgtcagaaattgcaacaagattcatacactacgactgttcaagatgggaaatca
tcaaatattttcaagggtcgaatatttcgcttttcaagttcttttcctccagagagaaga
gctgaaattgtcgaatggattaaacaaggaggaggagcattggtggatgatcaggttcag
aatgttcacttcactgttgagtgtcatggtgtgatgcggaggcctgctgatacttctcaa
tgtaccattgtttctagtcactggattagatcctgtgtggaggacggatgcatggtggat
gttgacagtcaccttctgtattcaccacttccctgccagattcctctacctgggttagga
ggctttcggttctgtgtctctcagtatgaagagaaagatagggtgttattaagaaatctt
tgctttgttctaggagctaaattcacggaaaaactgagtaagaaggtcacacatttgatt
tgcaagttcagcagtggcccaaagtatgaggctgcgtgcaagtggggcatacaagcagtt
acttctgagtggatctctgaatgtgtcctgcaggataagattattgctctggatcaattt
cgcccgaaagaagttactgctcaagacagagaggccggagtatgcacacagagccagtat
cctgcgcaggtggctcgcatgatatctggagatgttctatctcacttacctagtcaatct
caagtcatgacgaaaacaccgactcatgttattggaaatgaaagtgaaagctttcaaagc
ctcagcggagaagcaaaacattctttagtctccattaaaagggcaaggcttgtggatgat
gacagtcagaaggatatacttgcaggtgtagttcgtccgactggcaggatggaatccatg
agaaacaggttatcagaggctaatgaagaagtttctcatgctgtttctgatgtagctgca
gctattgaagatttgttagcacaaacgagtaagattcaagacatgaagtcaccaggtggt
tttcgatgtgagcaaagtcttttttcacctgatcattcaattcttggccaagaccattta
gaacctcgtcctgcctttgggatttcaaatagctggttaaacaggaatgagaaacaagat
gacctttgcactccttctggacaaggtgcaaaagaaggcacttatgattgtttcagtgaa
acacagacggagtcacaggttgttgggtatgaagaagatttgtcaggcaggcaaatgata
attgacagagttcgtacccaaagtagcatgatttaa
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