Telopea speciosissima (New South Wales waratah): 122669297
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Entry
122669297 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122669297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122669297
03041 Spliceosome [BR:
tss03041
]
122669297
03009 Ribosome biogenesis [BR:
tss03009
]
122669297
03016 Transfer RNA biogenesis [BR:
tss03016
]
122669297
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122669297
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122669297
Spliceosome [BR:
tss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122669297
Complex C
U4/U6.U5 tri-SnRNP related factors
122669297
Ribosome biogenesis [BR:
tss03009
]
Eukaryotic type
Pre-60S particles
Helicases
122669297
Transfer RNA biogenesis [BR:
tss03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122669297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
122669297
NCBI-ProteinID:
XP_043721977
LinkDB
All DBs
Position
7:complement(9274925..9290586)
Genome browser
AA seq
991 aa
AA seq
DB search
MASLKRKSIEEDSVESMHPQKQQKENGIISLDEPIACVHDVSYPEGFVPSSSFASREEIK
PAKEFPFKLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRDKQRVIYTSPI
KALSNQKYREFKEEFADVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIMREVAWIIF
DEVHYMRDRERGVVWEESIVMAPRNSHFVFLSATVPNAKEFADWVAKIHQQPCHIVYTDY
RPTPLQHYIFPAGGHGLYLVVDEKGKFREDSFQKALNALASTAEGDKKRENGKWHKGLLT
GRAGEESDIFKLVKMIIQRQNDPVILFSFSKRECEFLAMQMAKMDLNGDDEKENIERIFW
SAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATETF
SIGLNMPAKTVVFTNVRKFDGDKFRWVSSGEYIQMSGRAGRRGIDERGICILMVDEKLEP
STAKMMLKGSADCLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQSDRAIPDLEKQA
KDLEVERDSIDIDEEESLKDYYNLLQQYKSLKKDVRDIVCSPRYCLPFLQPGRLVRIHCS
ISDDKTPSVSPEEQVTWGVIINFERVKDISEDDVNRKPEDANYKVEVLARCMVNKEGVSK
KSIRIVPLKDSGEPIVISIPLAQIEGLSSIRLIIPKDLLPLQARENTLKKILEVLSRFAK
EGMPFLDPEEDMKVPSNSYKKAVRRIEALEHLFEKHEVAKAPLIEQKLKVLHMKQELTAK
IRSIRKAMRSSRVLAFKDELKARKRVLRRLGYITTDDVVELKGKVACEISSADELTLTEL
MFNGVLKDINVEEMVSLLSCFVWQEKLKDAQKPREELDLLFTQLQETARRVAKVQLECKV
QIDVENFVNSFQPDIMEAVYAWTKGSKFYEIMEISQVFEGSLIRAIRRLEEVLQQLIQAA
KSIGETELELKFGEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctttgaagaggaaatcgatagaagaagattctgtggagtctatgcatccgcag
aaacaacagaaggagaacggtataatcagtttagacgagccgatagcatgtgtgcacgac
gtgtcttaccctgagggttttgttccatcttcaagtttcgcttctcgagaagaaataaag
cctgcaaaggaattccccttcaagcttgacccttttcagtctgaagcaattaggtgcctt
gataatggggaatctgtcatggtgtctgcacatacatcagcaggaaaaactgttgttgca
ttatatgccattgctatgtctttacgagacaagcaacgggttatctacacctcgccaatc
aaggcactcagcaaccaaaaatatagggaattcaaagaagagttcgcggatgttggtttg
atgactggggatgtaaccattgagcccaatgcttcttgtttggtcatgaccacggaaatt
tggcggagtatgcaatataaagggtctgagattatgcgggaggtggcttggattatcttt
gatgaggtgcattacatgcgtgacagagagagaggagtggtatgggaggagagtattgtt
atggccccaaggaattctcattttgtattcctctcagcaactgtgccaaatgccaaggag
tttgcagattgggtggctaagatccaccaacaaccatgtcatattgtttatacggattac
cggccaacgccgcttcagcattacatttttcctgctggaggtcatggactatacttggtg
gtggatgaaaagggaaaattccgtgaggatagctttcagaaggctcttaatgcacttgct
tccactgctgaaggggacaagaaaagggagaatggcaagtggcataagggtttattgaca
ggtagagctggtgaagaaagtgacatcttcaagttggtgaaaatgataattcagcgtcag
aatgatccagtgattctctttagctttagcaaaagggaatgtgaatttctagcaatgcag
atggcaaaaatggatctgaatggagatgatgaaaaagagaacatagaaagaatattttgg
agtgctatggacatgctttcagatgatgacaagaagctgccccaggtttcaaatatgtta
cccctgttgaagcgtggaattggagtgcaccactctggcttgcttcccatcttaaaggaa
gtgattgagatactctttcaagaaggttttatcaagtgcttatttgccacagagacattc
agcataggtttgaacatgccagcaaaaactgttgtgtttacaaacgtacgtaaatttgac
ggggataagttcagatgggtatccagtggagagtacatacagatgagtggtcgtgctggc
cgtcgaggtattgatgagcgtgggatatgcatcctcatggtggatgagaagctggagcca
tctacagctaaaatgatgctgaaaggaagtgctgattgtttgaacagtgccttccatcta
agctacaacatgcttttgaatcaaatgcggtgtgaggatggtgatccagaaaatttgctc
aggaattcgttctatcagtttcaatctgaccgtgccattcctgatcttgagaaacaagca
aaggaccttgaagtggagagagattcaattgacattgacgaagaggagagtttgaaggat
tactacaatctcttacagcagtacaaaagtttgaagaaggatgtacgtgatattgtgtgc
tcaccgaggtactgtttaccctttttacagccaggaagacttgtgcgcatccattgctca
attagtgatgacaaaactccatctgtctcccctgaggagcaggttacttggggagtgata
atcaattttgaacgggtaaaggacatttctgaagatgatgtgaatagaaagcctgaggat
gcaaattacaaagtggaggttcttgctagatgcatggtgaataaagagggagtatcaaaa
aagtctattaggattgttccattgaaggattccggggagccaattgtcatttccataccc
cttgctcagattgagggtttgagtagtatccgccttatcatcccaaaggatcttttgcca
ttgcaagctcgagaaaatactctgaagaagatcttggaagtgctttccagatttgctaaa
gagggaatgcccttcctagatcctgaagaagacatgaaggttccaagtaactcatacaag
aaggctgtgcgccggattgaggctttagagcacctgtttgaaaagcatgaagttgcaaag
gctccacttattgagcaaaagctcaaagtattacacatgaagcaggaattaacagccaaa
atcaggtcaataaggaaagctatgcgttcgtccagagtcttggcttttaaagatgaactc
aaggcccgcaaacgagttcttcggaggcttggatacattacaactgatgatgttgtggag
ttgaaggggaaagttgcttgcgagataagtagtgcagatgagctcacactgacagaactc
atgttcaatggggtgttaaaggacataaatgtggaagagatggtttctcttctctcttgt
ttcgtgtggcaggagaagcttaaagatgcccagaagccccgggaagaacttgatttgctt
tttactcaattacaagagaccgcaaggagggttgccaaggttcagcttgagtgcaaggtc
caaattgatgtcgagaatttcgtaaattctttccagcccgacattatggaggctgtttat
gcttggacaaaaggttcgaagttctacgagattatggaaatctcacaggtcttcgagggt
agcctgatcagggccatcaggaggttggaggaagtcctgcagcaactcatacaagctgca
aaatccattggagaaactgagcttgaattaaaatttggagaggctgtctcaaagattaag
agggacattgtatttgcagcatctctgtatttgtag
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