Telopea speciosissima (New South Wales waratah): 122669572
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Entry
122669572 CDS
T07910
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
tss04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122669572
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122669572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122669572
04121 Ubiquitin system [BR:
tss04121
]
122669572
03400 DNA repair and recombination proteins [BR:
tss03400
]
122669572
Enzymes [BR:
tss01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122669572
Spliceosome [BR:
tss03041
]
Complex B
Other components
Prp19 complex
122669572
Complex C
Prp19-CDC5 complex
122669572
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
U-box type E3
122669572
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
122669572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_SCAP
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_like
PEP5_VPS11_N
Beta-prop_VPS8
Beta-prop_ACSF4
KNTC1_N
zf-Nse
PAS_11
U-box
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
122669572
NCBI-ProteinID:
XP_043722298
LinkDB
All DBs
Position
7:17132994..17154179
Genome browser
AA seq
523 aa
AA seq
DB search
MFCSISGVVPEEPAVSRKSGLLFEKRLIERHIADYGKCPVTGEPLTMDDIVLLKTSEIVK
PRSSQAASIPGLLGIFQNEWDGLMLSTFALEQQLHMARQELSHALYQHDAACRVIARLKK
ERDEARSLLSLAERQIPISASAPVTANALALSNGKRAAEDEELGPGGKRIRPGISSGIIV
ELTDCNSALSQERKKRQIPPTLAPVDALERYTQLSSHPLHKTSKPGILSIDIHPSKDVIA
TGGVDTNAVIFDHASGQILSTLSGHSKKVTCVKFVPRDELFITGSADKTVRLWQGSENGN
YNCQHILKDHNSEVQAVTIHATHNYFVTASLDNTWCFYDLSSGLCLTQVGDASGSEGYTS
AAFHPDGLILGTGTAEALVRIWDVKSQSNVAKFDGHIGPVTAMSFSENGYFLATSAHDGV
KLWDLRKLKNFRTFTPYDSNTPTNAVEFDHSGSYLGIAGSDMRVYQVASVKAEWNCIKTF
PDLSGTGKATCVKFSSDAKYMAVGSMDRNLRIFGLPGDGAEES
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgttctgttcaatctccggcgtagtgccggaagagccggcggtttccaggaaatccgga
ctactctttgagaagaggttgattgagcgacatatagcggactatgggaaatgtcctgtg
actggagagcccctcactatggatgacattgtcttattaaaaaccagtgagatagtgaag
cccaggtcttcacaggcagctagtataccaggactgctaggaattttccaaaatgaatgg
gatggcttgatgctatccacttttgcattggagcagcagcttcatatggcaaggcaagag
ctgagtcatgctctgtatcagcatgatgctgcttgccgtgttatagcaagattaaagaaa
gaaagggatgaggcaagatcgttgttgtctctggctgaaagacagattcctatttcagcc
tctgctcctgtgacagcaaatgctttggctcttagcaacgggaaaagagctgctgaggat
gaagagcttggccctgggggaaagagaattcggccaggtatttcctctggtatcattgta
gagctgacagactgcaatagtgcactctcacaagagcggaaaaagcggcagattcctcca
acattggcacccgttgatgcactggagaggtacacccagctctccagtcatcccctccac
aaaactagcaagccgggtatattatctattgatattcatccctctaaggacgtgattgca
actggtggtgttgacaccaatgctgttatatttgaccatgcatctggtcagatcttgtct
acactcagtggccattctaagaaggttacctgtgtcaagtttgtacctcgggacgaactt
tttattactggttcagctgataaaacggttcggctatggcaaggatctgaaaatggaaac
tacaattgccagcacatcttgaaggatcataattcagaggtgcaagctgtcacgatccat
gccacccataattactttgtgactgcttctctcgacaatacatggtgcttttatgatctt
tcttctggattatgcctcactcaggttggagatgcttcagggtcagagggctatacgtca
gctgcttttcatcctgatggtctcatccttgggactggaactgcagaggcacttgttcga
atttgggatgtaaaaagtcagtcaaatgttgcaaagtttgatgggcatattgggccagta
actgccatgtctttctctgaaaatggctacttcttagcgacatcagctcatgacggtgtc
aagctttgggatctccgcaaattgaaaaatttccggaccttcactccttatgattcaaat
acaccaacaaatgctgtggaatttgaccatagtggatcttaccttggaattgctggttca
gatatgagagtttaccaagttgcaagtgtcaaagcagaatggaattgcatcaaaacattc
ccagatttgtctggcacaggtaaagcaacttgtgtgaagtttagttcagatgcaaaatat
atggcagtagggtcaatggatcggaacctccgaatctttggcttgcctggagatggtgca
gaagagtcttag
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integrated database retrieval system
