Telopea speciosissima (New South Wales waratah): 122669843
Help
Entry
122669843 CDS
T07910
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122669843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tss04121
]
122669843
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122669843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_14
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
122669843
NCBI-ProteinID:
XP_043722648
LinkDB
All DBs
Position
7:36398807..36402367
Genome browser
AA seq
581 aa
AA seq
DB search
MAYSFPEEVLEHVFSFIHSYKDRNAISLVCKSWYDIERWCRRRIFIGNCYAVTPRITIRR
FPELRSVSLKGKPHFADYNLVPHKWGANLYPWVAAMAQAYPWLEELRLKRMVVTDDTLEM
ISHSFKNFKVLVLSSCEGFTTHGLAAIAANCRNLRELDLQETEVDDPSGNWLSHFPESCT
SLVSLNFTRLEGEVSFSALERLVGRCTNLRTLRLNQAVPLDKLANLLCRAPQLVDLGTGI
YSGEVRPELYSKLVSAFAGCKELKNLSGLWEVVPAYLPAIYPVCPGLTSLNLSYATIQSV
DLIKLVSQCQNLQQLWVLDYIEDSGLDALAASCKDLRELRVFPSDPYGAEQNVSLTEQGL
VSVSEGCPKLHSVLYFCRQMSNAALFTIARNRPNMTRFRLCILEPHTPDYLTLQPLDVGF
GAIVEHCKNLRRLSLSGLLTDRVFEYIGTHAKKLRMLSVAFAGDSDLGLHHVLSGCKSLR
KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMQRLNVEVIDESGPP
DSSPDDCPVERLYAYRSVAGPRFDRPTFVWTVDENSAMRLS
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcgtattcatttcctgaagaggttctagagcatgttttctcttttattcattcctat
aaggaccgaaatgccatttctcttgtctgcaagtcctggtatgatattgaacggtggtgc
aggcgtcggatcttcatcggaaactgttatgctgtgactccgaggattacaataagacgg
tttcctgagctccgatctgtgtcattgaaaggaaaacctcattttgctgattacaatctt
gtgccacacaaatggggagctaatttgtacccttgggtggcagccatggctcaagcctat
ccttggttagaagagctgaggctgaagcgtatggtggtaacggatgatactttggaaatg
atttctcattcgtttaagaactttaaggttttggtcctctcgtcctgtgaaggtttcact
actcacggactcgccgccattgctgccaattgcaggaatctgagagagttagacttgcag
gagactgaagtggatgatccgagtggaaattggctcagccatttccctgagtcatgtacg
tcactggtttcccttaactttacacgcctggagggggaggtcagcttctctgcactggag
cgtctagtaggaaggtgcaccaacttgaggacccttcggctaaaccaagctgtgcccctt
gacaagcttgccaacctcctctgccgggcacctcagctggttgatcttggtacagggatc
tactcaggtgaggtccgccctgaactctactcaaagctcgtgagtgcctttgcaggctgc
aaggagcttaaaaacctctctgggctatgggaagtggtccctgcttatcttccagctatc
taccctgtttgtcctggactcacatcattgaacttgagctatgctaccatccaaagcgtg
gatctcatcaagcttgttagccagtgtcagaatctgcagcagttgtgggtactggattac
attgaagacagtggccttgatgctcttgcagcatcttgcaaggatctgcgggaactgaga
gtatttccttcagacccgtatggtgcagagcagaatgtctcactaacggaacagggcctt
gtctccgtttctgagggttgtcccaagcttcattcggtgctctacttctgccgccaaatg
tccaatgctgccctatttaccattgctagaaaccgtcccaacatgactcgtttccgtcta
tgcattcttgagcctcatacccccgattaccttactctacagccccttgatgtgggcttt
ggtgctattgtggagcactgcaagaatctccggcgcctttcactctctggtctcctcaca
gatcgagtatttgagtacattggcactcatgctaagaagcttcggatgctgtcagtggcc
tttgctggggatagtgacttgggactccatcatgtgctgtccgggtgtaagagcctccgg
aagctggagattcgggactgcccctttggtgacaaggctctcttggccaatgcatcaaag
ctggagacaatgcgatccctttggatgtcttcatgctctgttagttttggagcttgtaag
ctgttgggtcaaaagatgcaaaggctcaatgtagaggttattgatgagagcggaccaccg
gattcaagcccagatgactgtcctgtcgaaaggctttatgcttatcgatcagttgcaggg
cctagattcgacaggccaacctttgtttggacagtggatgagaactctgccatgaggctt
tcttag
DBGET
integrated database retrieval system
