Telopea speciosissima (New South Wales waratah): 122669908
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Entry
122669908 CDS
T07910
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122669908
09123 Folding, sorting and degradation
03018 RNA degradation
122669908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122669908
03041 Spliceosome [BR:
tss03041
]
122669908
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122669908
mRNA degradation factors
5'-3' decay
Lsm complex
122669908
Spliceosome [BR:
tss03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122669908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122669908
NCBI-ProteinID:
XP_043722748
LinkDB
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Position
7:7082804..7095470
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRRPPGVGRGRGRGREDGAGGRQAKGIGRGQDD
GGAKGMGGGRGRGGTGGKSGANRGGGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctctttctctactgaagacggcacagggtcatcctatgttggtagaactgaag
aatggggagacttacaatgggcatttagtgaattgtgacacttggatgaacattcacctt
cgtgaagttatctgtacctcaaaggatggggacaggttttggcgaatgccagaatgttac
atccgtgggaatacaattaagtatcttcgagttccggacgaggtgattgataaagttcag
gaagaaaccaagagccgctcagataggaggcctcctggagtaggccgtggaaggggaaga
gggagagaggatggtgctggtgggaggcaggcaaaaggcattgggcgtggccaagatgat
ggaggcgctaaaggcatgggtggaggccgaggcaggggtggtactggtggcaagagtggt
gccaacagaggtggaggtcgtggacgtggctga
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