Telopea speciosissima (New South Wales waratah): 122670073
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Entry
122670073 CDS
T07910
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tss03036
]
122670073
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122670073
microRNA pathway
RISC loading complex
122670073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
SNF2-rel_dom
dsrm
DUF3198
SLFN-g3_helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
122670073
NCBI-ProteinID:
XP_043722964
LinkDB
All DBs
Position
7:65482970..65594597
Genome browser
AA seq
1680 aa
AA seq
DB search
MASSTELNPLKRSFEQLTESESKMSPGDECEVTEANGLIPKEFNARSYQKKVFQVALRKN
TIAMLETGAGKTMIAVMLIKEIGQAMKMNAEKKLIIFLAPTVHLVNQQFEVIKIHTNLKV
EEYYGAKKIDEWSAESWEKEIRDQDVMVMTPQILLDALRKAFMTIEMVCLMIFDESHRAI
GNHPYTKIMKEFYHKSGNKPKIFGMTASPVVRKGVSSSMDCEDQISELECILDSKICTIE
DKAELELYVPSAKEITRYYDPISFRCEDLKAKLNSSLSKSDALLVEMQGKLPSQFKDTDE
IYKKLRKRLSNHHSKILHCLDDLGLICAHEAAKVCLENVPILGTTEEELYRASFLQCKYF
LEEVLRIIEECLPSDYEKFLDVGTLGLEALEMGFISPKLYELIQIFQSLGGTRQILCLIF
VERIITAKVIERFIKKLNYLSHFSVSYLTGGSSSVDALTPKMQKKTLDSFRRGEVNLLFA
TNVAEEGIDVPNCSSIIRFDLPKTVRSYVQSRGRARQPDSQYVTMLERGNIKQRDLLFEI
IRSDRSVTDTTLNRDPNACISRVCCVDETSAYVVESTGASVTADSSIGLIYRYCEKLPGD
KYYTPKPNFQFSLSGGSYEYTLSLPPNAAFQKVVGPANRNSHISKQLVCLEACKKLHQMG
ALDDHLLPYIEDPSRDAVIERTEESASGAGTTKRKELHGSARVRALSGTWGGKPDGVILQ
AYKVNFSCNLVGEFYSGFVLLIDSKLDDEVANAEVELYLIPDKLVKSSVFPCGEVHLDAE
QVKKSMCFQGFFFNGLFLTSKKRKEYLIKTENKSLWCSSNMYLLLPLELPDPASHESVRI
NWRAIDGCASVVNFLKEKSNFSADHSFISEKGDSLFSSTSLSDTECKSSEVVHLANVSVN
FNDLVNMVVVAVHTGRIYSVLDVMIGTSAESPFDLTSDAVPSNYSSFREYFNKKYGILLM
HPGQPLLLLKQSHNAHNLLLAKPNEGGSLCKETPEAGGVVEKPQNHVHMPPELLVSIGVS
INVLKTFYLLPSLMHRLESLMLACQLREEIACHPNDSPISSSLILEALTTLRCCEKFSLE
RLELLGDSVLKYAVSCHLFLRYPKKHEGQLSARRSWAVCNSTLHKLGTNRKIQGYIRDSA
FDPRRWVAPGQLTSHPVCCKCLVDTNEVPLGRKFITEDTSVVVGKICDKGHRWMCSKTIA
DCVEALIGAYYVGGGLSAALLIMKWFGIDVEFEPRLIEEAINSASVWSYTPNVNELEMLE
SKLGYRFSVKGLLLEAITHASLQELGVGYCYQRLEYLGDSVLDLLITWYLYQNHTEIDPG
ELTDLRSASVNNENFARVAVKHNLQQHLQHGSGVLLGQITEYVKSVSQTHDNTRSLQGTK
GPKVLGDMVESIAGAILIDTKLNLDEVWRIFRPLLSPIVTPDKLELPPLRQLHELCDHLG
YFIKEMCVTKGDVVHAELRLQLKDVLLKGEGCERNRKAAKGRAALHLLKDLEQERGVSHS
LYVSKQKKLEPADGSSFMDMAVYHHLQPNDEAVVGPVTHKKLKTIEDMLPVEPPANNSLL
EDGFEKVCDPKLASPVSVSINLQKGGPRSSLYQLCRMLQWPMPTFHSVEHKSRVPIEFGE
GSERRTGFSSFISKISLHIPNNGVIELTGDQKADKKSSFDSAALLMLYELGRQGRCVIGD
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtctacagagcttaatcctctgaagcgaagtttcgaacaactcacagagtcg
gagtcaaagatgtcgcctggtgatgaatgtgaagttacagaagcgaatggactgattccg
aaggaattcaatgcaaggagttaccaaaaaaaggttttccaagtcgctcttcggaaaaat
acgatcgctatgttggaaactggtgcagggaaaacaatgatcgctgtgatgctcataaaa
gaaatagggcaagcaatgaagatgaatgcagaaaaaaagttgattatatttctggcacca
actgttcatcttgtgaatcagcaatttgaagtcattaagattcatacgaatctcaaagtg
gaagagtattatggcgctaaaaaaattgatgaatggagtgctgaaagttgggagaaagaa
ataagagatcaagatgtaatggttatgacaccccaaattttattggatgctttgaggaag
gcattcatgactatagaaatggtatgcttaatgatatttgatgaaagccatcgtgctata
ggaaatcatccatatacaaaaataatgaaggaattttatcacaaatctggaaacaagcca
aaaatctttggaatgaccgcatcccctgtagttagaaaaggtgtatcatcaagcatggat
tgtgaggatcaaatttcagaactcgaatgcatcttagattcgaagatttgtaccatagag
gacaaagctgaactggaattatatgttccctctgcaaaagaaatcactagatattatgac
cccattagctttcgttgtgaggatttaaaggcaaagttgaattcttcattgtctaagtct
gatgctttgttggttgagatgcaagggaaattgcctagtcaattcaaagacactgatgag
atatataagaaattgagaaaacgtttatccaatcaccattcaaagattctacattgtctg
gatgatcttggccttatatgtgctcatgaggctgcgaaagtatgtttggaaaatgtacct
atattaggcactacggaggaggaactttatagagctagttttctgcagtgtaaatatttt
cttgaagaagtgctacgtataattgaagagtgtttgccatctgactatgaaaaatttcta
gatgttgggactcttggtctagaggcccttgaaatgggttttatatctccaaagttatat
gaactgatccaaatatttcaatctttgggggggactaggcaaattttatgcctcattttt
gttgaaagaattatcacagctaaagtaattgaaagatttattaagaagcttaattattta
tctcatttttccgtttcatatttaactggtgggagttcatcagttgatgcactaacacca
aaaatgcaaaagaaaactctggattcatttcgccgtggcgaggttaacctattgttcgct
actaatgtggctgaagagggaattgatgtgccaaactgctcctctataatacgctttgac
ttgccaaagacagttcgtagttatgtccaatcacgaggacgagctcgccaacctgattct
caatatgtgactatgcttgaaaggggaaacataaagcaacgggatctattatttgaaatt
atcagaagtgaccgttctgtgacggataccactttgaatagagaccccaatgcatgcatt
tctagagtgtgttgcgttgatgaaacaagtgcatatgttgtggagtcaactggagcatca
gttacagcagattccagtattggtctaatctacagatactgtgaaaagctccctggagac
aagtattacactccaaagccaaattttcaattctcattgtctggaggatcttatgagtat
acattatctttacctcctaatgcggcgtttcaaaaagtagttggccctgcaaacagaaat
tctcatatatcaaaacagcttgtgtgcttggaggcctgtaagaaattacatcaaatgggg
gcccttgatgatcatcttctcccttatattgaagatccttcaagagatgctgttattgaa
agaactgaggaatctgcttcaggagcgggaacgacaaagaggaaggaattacatggaagt
gccagggtccgtgcattatctggaacatggggaggcaaacctgatggtgttatattacag
gcatataaagtaaatttctcctgtaatcttgttggagagttctactctggatttgtcctt
ttaattgactcaaaacttgatgacgaagtagcaaatgcagaagtggaactttacttgatc
cctgacaagttggtcaagtcatctgttttcccatgtggggaagtccatttggatgcagag
caggtgaagaagtcgatgtgtttccagggatttttctttaatggattatttttaacttct
aagaaacgaaaagaatatctaatcaagacagaaaacaaatccttgtggtgcagttcgaac
atgtatctgcttttaccacttgagcttccagaccctgcaagtcatgaatctgtgagaatt
aactggagggccattgatggatgtgcttcagtggttaactttttgaaggaaaaatcaaat
ttcagtgctgatcactctttcatcagtgaaaaaggggattcattattttctagcactagt
ttgtctgacacagaatgcaagagctctgaagttgttcacttggctaatgtttctgttaat
tttaatgatttggtaaatatggtggtagtggccgttcatactgggagaatttattctgtt
cttgatgtgatgattggtacatctgctgagagtccatttgatttgacttctgatgcagtc
ccatcaaattattcctctttcagagaatacttcaataagaaatatggcattttactgatg
catccaggtcagcctctgttgctgttaaagcaaagccacaatgcacacaaccttcttctt
gcaaagccaaatgaaggtggttccctatgtaaggagacccctgaagctggtggggttgtt
gaaaagccacaaaatcatgtccacatgcctccagagcttctagttagcattggtgtatca
attaatgttttgaaaacattttacttgttgccttctttgatgcaccgtttggagtcccta
atgctggcctgtcagctcagagaagaaatcgcttgtcacccaaatgacagccctatatca
agctctctgatcctggaagcacttacaacacttagatgttgtgaaaagttttctcttgag
cgtttggaattgttaggtgactcagtattgaaatatgctgtgagctgccatctctttctt
agatatcccaagaaacatgaagggcaattgtctgcccgtaggtcctgggctgtttgcaac
tcaacactacataaattgggaacaaatcgcaaaatacagggttatatacgggacagtgca
tttgatccacgtcgttgggttgctccaggacagcttacttcccatcctgtttgttgtaaa
tgtctggtggatactaatgaagtgcctcttggaagaaaatttataactgaagatacttct
gtggttgttggaaagatttgtgataaaggtcataggtggatgtgctctaagactatagca
gattgtgtcgaagcactgataggagcttattatgttggtggtggattgagtgctgcccta
ttaataatgaaatggtttggtatagatgttgagtttgagcccagattgatagaagaagcc
attaatagcgcatctgtctggagttacacccctaatgttaatgaactagagatgctggag
tcaaagcttggctataggttttctgtgaagggtcttctgttggaggctataacacatgct
tctcttcaagaattaggtgttgggtactgttatcagaggcttgaatatttgggcgactct
gtattggacctgcttattacttggtatctctatcaaaatcacacagaaattgatccaggg
gagttgactgacttgcgatcagcatctgttaataatgaaaactttgctcgagttgccgtg
aaacacaaccttcaacagcatcttcagcatggctcaggggtgcttttaggacaaataaca
gaatatgtgaaatctgtttcacagactcatgataacactaggtctcttcaaggcacaaaa
ggccccaaagttctcggggacatggtggaaagtattgcaggagcaatactaatcgataca
aaacttaaccttgatgaagtttggagaattttcagacctttactttcacctattgtgaca
cctgacaaacttgagttgcctcccctgcgtcaactacatgaattatgtgatcatcttgga
tacttcataaaagagatgtgtgtaactaagggagacgtggttcatgctgaacttcgttta
caactgaaagatgtccttttgaaaggtgagggatgtgagaggaatagaaaagcagcaaaa
gggcgagcagcacttcatttgttgaaagacctagagcaggaaagaggtgtttcacattca
ctttatgtttctaagcagaagaaactggaacctgctgatggttcatctttcatggacatg
gctgtttaccaccatcttcaaccaaatgatgaggcagttgtgggaccagtcactcataaa
aaactaaagacaattgaagacatgctgcctgtggagccacctgcgaataattcccttttg
gaggatggttttgagaaagtctgtgaccccaagcttgcttctccagtaagtgtatcaatt
aacttgcagaaaggaggccctcgatcctccctctatcagctctgtagaatgttacaatgg
ccaatgcctactttccattcggtggaacacaagtcgagagtgccaattgaatttggtgaa
ggttccgaaagacgcacgggtttcagcagttttatatcaaaaatttccttgcacattcca
aataatggtgttattgaattaacgggagatcagaaagctgataagaagagttcatttgac
tctgcagcactcctcatgctttatgagcttggaagacaggggagatgtgtgattggggat
tag
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integrated database retrieval system
