Telopea speciosissima (New South Wales waratah): 122670561
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Entry
122670561 CDS
T07910
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122670561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122670561
Spliceosome [BR:
tss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122670561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
PRP4
WD40_RFWD3
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
Beta-prop_SPT8
WD40_like
Tricorn_2nd
TPR_TRIP12_N
Motif
Other DBs
NCBI-GeneID:
122670561
NCBI-ProteinID:
XP_043723430
LinkDB
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Position
8:complement(58655573..58660531)
Genome browser
AA seq
588 aa
AA seq
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MEEEENPNTSTSLSDPSTTEVLVNDLTTAPATNLPPVLPPIPTVPPVAVATPEPLPQPII
TPATPPPIMPPIAPISSIPPPVPRPLAPLPVRPPVIRPLVPQNTEANGSDSDSDRDAAHG
SSADYEISEESKLIRERQEKAMQELLMKRRAYALAVPTNDSAVRARLRRLGEPITFFGER
EMERRERLRMIMVKLETEGQLEKLLKAHEDEEAATAAAVGEGDTDGPQEYPFFTEGSKEL
LDARVHIARYSIVKAALRLERERRRRNDPDEDLDAEMDSALKQAGTLVLDCSEIGDDRPL
SGCSFSRDGKLLATSALSGVAKLWGMPQVNKVTALKGHTERATDVAFSPVQNLIATASAD
RTARLWDTEGSVLRKFEGHLDRLARLAFHPSGKYLATASFDKTWRLWDVDTGVELLLQEG
HSRSVYGICFHHDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGISFSPNGYHLA
SGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKFEPQEGYFLATASYDMTAKVWSARDFK
PVKTLSGHESKVTSLDIVGEGNLVTVAHDRTIKLWSSRSEKENDMDVD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaagaaaaccccaatacaagcacctctctttcagatccctcaacaacagag
gtacttgttaatgatctgactacagctccagccactaatcttcctcctgttctgcctccg
attcccactgttcctcctgttgctgttgcaacaccggaacctcttccccaacctataatt
accccagcaaccccaccaccaattatgccgcctatagctccaatatcctcaatacctccc
ccagttccccgccctctggcaccacttcctgttcgtccaccagtcatccgtccccttgtc
ccacaaaacactgaagcaaatggctctgattcggattcagaccgtgatgctgctcatggt
tcatctgcggattatgagatatcagaagagagtaaactgatccgagaaaggcaggaaaaa
gcaatgcaggaacttctgatgaagcgacgtgcttatgctcttgctgtgcccactaatgac
tcagctgtccgtgctcgtctccgccggcttggtgagccaattacattttttggagaaagg
gagatggaaaggagggagaggttacggatgattatggtgaagcttgagactgaaggacag
ttggagaagttgttgaaagctcatgaggatgaggaggctgctactgctgcagcggtgggt
gagggtgacactgacgggcctcaagagtacccattttttactgaagggtcaaaagaactt
ttagatgctcgggttcatattgctaggtattcaattgtgaaggctgccttgcggcttgaa
cgtgaaaggaggagaaggaatgatccagatgaagatcttgatgcagagatggattcagct
ctgaaacaggcaggtaccttggtccttgactgcagtgaaattggtgatgatcgaccactc
tcggggtgttccttttcacgagatggaaagctacttgccaccagtgctttgagtggagtt
gctaaattgtggggcatgcctcaagtaaataaggtcactgccttaaagggtcacacagag
cgtgcaaccgatgttgcattttctcctgtccaaaacctcatagcgactgcttctgctgat
cggacggctaggttatgggatactgaaggttctgttcttagaaaatttgagggccatctg
gatcgtcttgcacgtctcgcattccatccatctgggaagtacttagcaacagctagcttt
gataagacttggaggttgtgggatgttgacactggtgttgagttgcttcttcaagaaggt
catagcaggagcgtttatgggatatgtttccaccatgatggatctttagtggcatcgtgt
gggttagatgcacttgttcgagtgtgggacctgcgtactggaagaagcattcttgccttg
gaaggccatgttaagccggtcctgggaatcagcttttctcccaatgggtatcatttagcc
tctggtggtgaggataatacctgccgaatctgggatttgagaaagaagaaatccttgtac
ataataccagctcactcaaaccttgtctcacaagtaaaatttgagccgcaggaaggctat
tttctggcaactgcttcatatgatatgacagctaaggtgtggtcagctcgagacttcaaa
cccgtcaagacattatctggacatgaatcaaaagttacatcattggatatagtgggagaa
ggaaatcttgtgaccgttgcacatgatcggactatcaagctatggtcaagcagaagtgag
aaggaaaatgatatggatgttgattaa
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