Telopea speciosissima (New South Wales waratah): 122670562
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Entry
122670562 CDS
T07910
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122670562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tss03400
]
122670562
Enzymes [BR:
tss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
122670562
DNA repair and recombination proteins [BR:
tss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
122670562
BRITE hierarchy
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GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
122670562
NCBI-ProteinID:
XP_043723431
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Position
8:58624375..58647424
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AA seq
577 aa
AA seq
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MPVICASFCLTCAPFPLWVSLLLSSNAPLSFSYKPCSCNFAVAPRNWRSGSLVLSKTRVL
ESERLLSSHMVSPTLIVNSKKDMTLSSVGGGPHPRENLAKDNLEESNSVEIQTIRDDHSR
LETMTVQELKTVMRSVGIPTRGRKCDLQSALKCFLAENDDACAGQSSVAEAHSIAVRTPV
PSNGSPSKRKLINPSGEDQVQSPSTVSKISGIRQSKRRVKSPSLEVASTEVNSKFSTKKQ
NLPIKIDGHTGKKLPGVKGKASHICDEDDRAINGVDLSINPSEPWTMFAHKKPQPGWVAY
NPRTMRPSPLTNDVPFVKLMSWNVNGLRALLKLEAFSALELAKRENFDVLCLQETKLQEK
DVLDIKQSLLSGYDNSFWTCSVSKLGYSGTAVISRIKPQSVTYGLDKADHDSEGRLVTVE
FDSFYLICAYVPNSGDGLRRLTYRVTQWDQDLSNYIKELEKSKPVMLTGDLNCAHQEIDI
YNPAGNRRSAGFTDEERKSFETNFLSKGFVDTFRRQHPGIVGYTYWGYRHGGRANNRGWR
LDYFLVSESMADKVHDSYILPDVVGSDHCPIGLILKL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgccggtaatctgcgcctccttctgcttaacctgcgcaccctttcctctctgggtctct
cttcttctgtcttcaaatgctccactctcatttagttacaaaccatgttcttgcaatttt
gcagttgctccaaggaattggagatctggatccttagttttatcaaaaacaagagtgttg
gagtctgaacgtctactttcgagtcacatggtttctccaacactgatagttaatagcaag
aaagatatgacattgagctcagttgggggtggcccgcatcctagggagaacctagcaaag
gataacttggaggaaagtaactcagttgaaattcagacaattagggatgaccattctaga
ctggaaacaatgacagtgcaggagctcaaaacagttatgaggagtgttgggattcctact
agaggtcgtaagtgtgatcttcaatcagccttaaagtgcttcctggctgagaatgatgat
gcatgtgcaggtcaaagttcagtagcggaagcacattcgatcgctgtgagaacgccagta
ccttctaatggctctccatcaaaaaggaagcttattaacccatctggtgaagaccaggtt
caaagcccgagtactgtttcaaaaatttcaggaattcgacagtctaagagaagggtaaaa
tcaccttcgcttgaggttgccagtactgaagtcaattctaaattttctaccaaaaaacag
aacttgccaatcaaaattgatggacatacaggtaagaagctccctggagtaaaaggaaaa
gcttcacatatttgtgatgaagatgatagagccattaatggagtcgatctgtccatcaat
cctagtgaaccatggacaatgtttgctcataagaagccgcagcctggttgggtagcgtat
aatcccagaaccatgaggccttctcctttaactaatgatgtaccatttgtgaagctaatg
tcttggaatgttaacggcttaagagctttgctgaaactggaggctttctctgctcttgaa
cttgcaaaaagggaaaattttgatgtgctgtgcttgcaagagaccaaactgcaggagaag
gatgttttggacatcaagcagtctcttctatctggctatgacaacagcttctggacatgt
agtgtctccaagcttgggtactctggtactgcagttatctctcggataaagccacagtca
gtcacatatgggcttgacaaagctgatcatgatagtgaagggaggcttgtgacagtggag
tttgactcattttatttgatatgtgcatatgttccaaattctggagatggattgagaagg
ctgacttacagggttacacaatgggatcaggatcttagcaactacataaaagaactagaa
aaatcaaagcctgtcatgctgactggtgatttgaactgtgcacatcaagagatagatatt
tacaaccctgctggaaatagaaggagtgctggatttacagatgaagaaaggaaatcgttt
gaaacaaacttcttatctaaaggttttgtggatacctttaggaggcaacatccgggtatt
gttggctatacctactggggttataggcatggagggcgtgccaacaatagaggttggcgg
cttgattactttcttgtctcagaatccatggcggacaaagttcatgactcttacattctt
ccagatgttgtaggcagtgatcactgtcctataggcctcattctgaagctctag
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