Telopea speciosissima (New South Wales waratah): 122670812
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Entry
122670812 CDS
T07910
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122670812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122670812
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122670812
Spliceosome [BR:
tss03041
]
Complex C
Other components
Step II factors
122670812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
AAA_22
AAA_19
AAA_16
ABC_tran
NPHP3_N
nSTAND3
AAA_23
AAA_30
AAA_29
Sigma54_activ_2
SLFN-g3_helicase
Helicase_RecD
NB-ARC
T2SSE
ATPase_2
MMR_HSR1
FtsK_SpoIIIE
RsgA_GTPase
DAP3
Sigma54_activat
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
122670812
NCBI-ProteinID:
XP_043723741
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All DBs
Position
8:5230028..5260425
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AA seq
701 aa
AA seq
DB search
MAALPITQFEDKIIETVDQNPVVVIIGETGSGKSTQLSQILHRKGYTTSGIVAVTQPRRV
AAVSVARRVSHELGVQLGEEVGYSIRFEDRTSERTHIKYLTDGVLLRESLSNPELHQYSV
IILDEAHERSLNTDILLGLMKRLVKMRSSNLKVLITSATLDGEKVSRFFSNCPILTVPGK
LFPVEILYSKERPTSYIEASLKKALDIHVREPEGDVLIFMTGQDDIEKLVKKLEERVQSL
EEGSCMDAVVLPLHGSLPPEMQVRVFNRAPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSSGMYSLDIVQISRVQANQRAGRAGRTCPGKCYRLYPSFVYLEELPEVTVPE
IQRSSLTGSVLYLKSLDLPDIDILKFDFLDPPSRESLEDALKQLFLIDAIDENGSITDIG
RTMAELPLEPSLSRTLIEANKFGCLSQALTVAAMLSIETTLLPGQSKSTEKKRKHAPSDL
PDGSGWGDHIQLLQIFENWDLVDYDPRWCKDNDLQVRGMMFSKDVRKQLSQILQKIAKGQ
LDVQANQRWKENQQDYKSLRRALCIGYANQLAERMIRHNGYKTLGYKSQLVQVHPSSVLR
SDEDGMLPNYVVYHELISTSRPFMRNVCVVEMSWVMPILKKLEKLDIIKLSGGSKSSNEG
TNGEELLDSQKKDGDAVKVPDDSDSRIQAARDRFLARKGKK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcttcctattactcaattcgaagataaaattatcgaaaccgtggatcaaaat
ccagtagttgtaataattggagaaaccggttcaggaaagagtactcaactatctcaaata
ttgcacagaaaaggatacaccacatctggaattgtcgccgtcacgcaaccacgccgagtt
gctgcagtctcagttgcaaggcgggtttcacatgagcttggtgtacagcttggtgaggaa
gttggttattccatacggttcgaggacaggacttcagaaagaacacatattaaatacctt
actgatggagttcttcttcgtgaaagcctttctaacccagagctacatcagtattcagta
attattttggatgaagcccatgaaaggagtctaaacactgacattttgctgggtttgatg
aaacgattggtgaagatgcgttcctctaatttaaaggttctgattacttcagcaactctg
gatggtgagaaggtatcaagattcttctccaattgtccaatacttactgttcctgggaag
ttattcccagtggaaatactgtacagcaaagagcgtcccacaagctatattgaggcatct
ttaaaaaaagctcttgatatacatgtccgggaaccagaaggagatgtattaatattcatg
acaggacaggatgatatagagaagttggtaaaaaagttggaggagagagttcaaagcttg
gaggagggttcttgcatggatgctgtggttcttccacttcatggttctttaccacctgaa
atgcaggtacgagtgttcaatcgagcacctccaaattgtaggcgatttattgtcgccaca
aatattgcagaaacatccttaactgttgatggtgttgtatatgtcattgattctggttat
gtgaagcaacggcaatataatccatcaagtgggatgtattctcttgacattgttcaaatc
agcagagtccaagcaaatcagcgtgctgggcgagctggaagaacctgtcctgggaagtgt
tatcggctatacccctcctttgtttatcttgaagaattgccagaagtgacagtccctgaa
atacaacgctcttctcttactggaagtgttctttacttgaaatcgcttgatctccctgat
atcgatattctcaaatttgattttcttgatccaccttcacgtgagtcattagaagatgct
ttaaagcaattatttctcattgatgctattgatgaaaatggttcaattacagatatcgga
cgtacaatggctgaacttccattggaaccttcactttcaagaaccttaatagaggcaaac
aagtttggatgtttgtcccaggctttaactgttgctgcaatgttatccatagagactaca
ttgcttcctggtcaaagtaagagtactgagaagaagcggaaacatgctccgtccgacttg
ccagatggttcgggctggggtgaccacattcaattgctccaaatttttgagaattgggac
ctagtggactatgatccacgttggtgcaaagataatgacttgcaggttcgaggtatgatg
ttcagcaaagatgtccggaaacagctatcacaaatactgcagaaaatagcgaaagggcaa
ctggatgtacaagcgaatcaaagatggaaagaaaaccaacaggattacaagagtttgaga
agggctctgtgcataggttatgcaaaccagcttgctgagcggatgattcgtcacaacggc
tataaaactctaggttacaaatcacaacttgttcaggtgcacccatcttcagtgctcaga
tccgatgaagatggaatgctacccaactatgttgtgtaccatgagcttatttctacctct
cgcccattcatgcgcaatgtctgtgttgtggagatgtcatgggtcatgcccattttaaag
aagcttgagaaactggatatcataaagctcagtggtggatccaaatcttccaacgaggga
actaatggagaagaactcttggactcgcagaaaaaggatggtgatgctgttaaggttcct
gatgattctgatagtagaatacaggcagctagggatcgttttcttgctcgtaaaggaaag
aaatag
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