Telopea speciosissima (New South Wales waratah): 122671691
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Entry
122671691 CDS
T07910
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122671691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tss03400
]
122671691
Enzymes [BR:
tss01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
122671691
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
122671691
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
122671691
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
122671691
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122671691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
nSTAND3
AAA
Zeta_toxin
CPT
MeaB
AAA_16
G-alpha
AAA_22
AAA_17
AAA_28
NACHT
AAA_5
Viral_helicase1
AAA_14
ATP_bind_1
AAA_29
Motif
Other DBs
NCBI-GeneID:
122671691
NCBI-ProteinID:
XP_043725000
LinkDB
All DBs
Position
8:complement(51470539..51491939)
Genome browser
AA seq
764 aa
AA seq
DB search
MEVDCENTSKEEEKTGKNIVVILVGAPGSGKSTFCENVMSASRRPWVRICQDTIANGKAG
TKAQCLSSATEALKDGKSVFIDRCSLEKEQRVEFVKLGGLQVDVHAVVLDLPAKLCISRL
VVRTGHEGNLQGGKAAVVVNRMLQKKELPNLGEGFSRITFCQNESDVQGAVNTYCGLGPL
DTLPSGYFGQKNRDAKIQLGIMKFFKKVGATDSATLDKNCSLGSVSEQETKENDPSYKEP
EKVISSVGNVDEWKTEDLVLLEGSSVGSNGVPTLAFPSISTSDFQFNQGKASDIIVEKVE
EFLSKVGNVRLVLVDLHESKILSLVRSKAVHKNVDSKRFMTSVGDITRLYTRGGLRCNVI
ANAANWRLKSGGGGVNAAIYSAAGPALEAATKERAGSLCPGKAVVVPLPSTSPLFKEEGV
THVIHVLGPNMNPQRPNCLNNDYDKGCRILGEAYSSLFEGFASILSTQTKLWKGGEEGSG
SRASELHDNLSERDTTNKREGRYDSDRNKKYKGLQEESGIRHAISGSKGKEFLSAMTDSM
EGKVQPKNENIDSGRRRIWSSWAQALYHIAMHPEKHKNDVLEISDDIVVLNDLYPKAQKH
LLMLTRMDGLDSLADVGTEQLQLLKTMHAMGLKWVQSFLCNDASLVFRLGYHSAPSMRQL
HLHVISLDFNSNHLKNKKHWNSFNTAFFRDSVDVIEEIEKYGKATLHDDEKLLSMELRCH
RCRSAHPNIPRLKSHIRNCRAPFHATLLQNDRLVLAPSRVHNEA
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgattgcgagaacacctcgaaggaagaagaaaaaaccgggaagaatatcgtg
gtgatattggtaggtgctcctggtagtggcaagtccaccttctgcgagaacgtcatgagt
gcctctcgccgcccctgggttcgaatctgccaggacacaattgcaaatggaaaagctgga
acaaaagcccaatgcttaagtagtgcaaccgaggcattgaaggatggaaaaagcgtattt
attgatagatgcagtttggaaaaagaacagagggtggagtttgtgaaacttggtggactg
caagtggatgtgcatgctgttgtgcttgatcttcctgctaagctatgtatttctcggttg
gtagtacgcactgggcatgaaggaaatttgcaaggtggaaaagctgctgttgttgtgaac
cgaatgctgcaaaagaaagaattgcctaatttgggtgaagggttctccagaattacattt
tgtcagaatgaaagtgatgttcaaggtgctgtgaatacatattgtggtcttggtccctta
gacacccttccatctggatattttggtcagaaaaaccgagatgctaaaatccaacttggt
ataatgaaatttttcaagaaagtaggtgccactgactcagctacacttgataaaaattgt
tcactgggttctgtttctgaacaagaaaccaaggaaaatgatccctcctataaggaacct
gaaaaggttatatcatcagtagggaatgtagatgagtggaaaacagaggatctagtcttg
ctagagggatcttcagttggttctaatggtgttcctactctagcttttccgtctatttca
acatcagattttcaattcaaccaaggaaaggcatctgatatcattgttgagaaagtggag
gaatttttgagtaaagttggaaatgtcaggctagttcttgttgacttgcatgaatcaaag
attttatcattggttagatccaaagctgtgcacaagaatgtagactccaaaaggttcatg
acatctgttggagatataactcgtctttatactagaggtggtttacgctgcaatgtaatt
gctaatgctgcaaactggcgattgaaatctggtggtggaggtgtgaatgcagcaatatac
agtgctgcaggtccagccctagaagctgcaactaaggaacgagctggatctctttgccct
gggaaagctgtggttgttcctctcccttcaacttctcctttgtttaaagaagaaggtgtt
acccatgttatacatgttcttggacctaatatgaatcctcagagaccaaactgcctcaat
aatgactatgataaaggctgtcgcatacttggtgaggcctactcatcactttttgaaggt
tttgcatctatattgagcacccaaaccaaattatggaagggaggtgaagaaggttctggg
tcaagggcttcagagttgcatgacaatttgtctgagagagacactacgaataaacgagaa
ggcaggtatgattctgacaggaacaagaaatataaagggcttcaagaagaatctggaata
cgacatgcaatatcaggatcaaagggaaaagaatttttgtctgctatgactgattctatg
gaggggaaggtacagccaaagaatgagaacattgacagtggcaggagaaggatctggagc
tcatgggctcaggctctttaccatatcgccatgcaccctgagaaacacaaaaatgatgtc
ttagagatatcagatgatattgttgtgctgaatgacctttatcccaaggcacaaaagcac
cttctgatgttaaccagaatggatggtcttgatagtctggcagatgtaggcactgaacaa
cttcagttattgaagacaatgcatgctatgggtctgaagtgggtacaaagttttttatgt
aatgatgcttctttggtcttccgtcttggataccattcggcaccatcaatgcgacaactg
caccttcatgtcatcagcctggattttaattcaaaccacttgaagaacaagaagcactgg
aattcgtttaatactgctttcttccgtgattctgttgatgttattgaggaaattgagaaa
tatgggaaagcaacattacatgatgatgaaaaattattgtcaatggaattgcgttgccac
cgatgtaggagtgcacaccctaacataccccgcctcaaatcacatattagaaattgtcga
gctccctttcatgccactctgctccaaaatgaccgtcttgtacttgcacccagtcgagtt
cataatgaagcatag
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