KEGG   Telopea speciosissima (New South Wales waratah): 122672881
Entry
122672881         CDS       T07910                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    122672881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tss03019]
    122672881
   03036 Chromosome and associated proteins [BR:tss03036]
    122672881
Messenger RNA biogenesis [BR:tss03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     122672881
Chromosome and associated proteins [BR:tss03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     122672881
    COMPASS/SET1 complex (yeast)
     122672881
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st Beta-prop_SCAP WD_LRWD1 Methyltransf_13 Ge1_WD40 RMC1_N Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 122672881
NCBI-ProteinID: XP_043726320
LinkDB
Position
8:13218768..13237100
AA seq 333 aa
MAMSLTELDDETVRSMSIGAVFADFGGKINSVDFHRTKDLLVTASDDDSVRLYDIANATL
LKTTYHKKHGADRICFTHHPSSVICSSRYKTDSNDEPLRYLSMYDNRCLRYFKGHKERVV
SLCMSPINDSFMSGSLDHSVRIWDLRVNACQGLLHLRGRPTVAYDQQGLVFAVAMEGGAI
KLFDSRSYDKGPFDTFFVGGDTAEVSDIKFSNDGKSMLLTTTNSNIYVLDAYAGEKRCGF
SLEPSSNTGIEATFTPDGQYVVSSSGDGTLHAWSINMRNEVACWNSHIGVATCLKWAPRR
AMFVAASTVLTFWIPNNGKLNPESLARDLDAAV
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcgatgtctctcacagaactcgatgatgagactgtacgcagtatgtcgattggagcc
gtttttgcagactttggtggaaaaatcaattcagttgattttcatcgtaccaaggatcta
ctggttactgctagtgacgatgactcagtgcggctttatgacattgcaaatgcaactttg
ttgaagaccacatatcataagaagcatggtgctgatcgtatatgctttacacaccatcca
agctctgttatatgctcttcgagatacaagacagattccaacgatgaacccctgcgatat
ctttccatgtatgacaatcgatgccttcgctacttcaaagggcacaaagagagagttgtt
tcactctgcatgtctccaattaatgacagcttcatgtctggttcacttgatcacagtgtc
agaatatgggatcttcgtgtaaatgcttgccagggactccttcatttgcgaggtaggcct
acagttgcatacgatcaacagggtcttgtttttgcggtagcaatggaagggggtgctatt
aaactgttcgattcacgttcttatgataagggtccatttgacaccttttttgttggagga
gatacggctgaggtctcagatattaaatttagcaatgatggaaaatctatgcttttgaca
acaacaaatagcaatatctatgttcttgatgcatatgcaggggagaagcgatgtggcttc
agcttggaaccatcttcaaatacaggcatagaggcaacttttaccccagatgggcaatat
gtggtttcaagctcaggagatggaaccttgcatgcatggagtatcaacatgagaaatgag
gttgcatgctggaatagccacattggtgtagcaacttgcttgaagtgggcaccccgtagg
gccatgtttgttgccgcgtctactgttcttacattttggattccgaataatgggaagttg
aatccagaatctcttgccagggatcttgatgctgcagtatag

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