KEGG   Telopea speciosissima (New South Wales waratah): 122672916
Entry
122672916         CDS       T07910                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03082  ATP-dependent chromatin remodeling
tss03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122672916
   03083 Polycomb repressive complex
    122672916
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tss03036]
    122672916
Enzymes [BR:tss01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     122672916
Chromosome and associated proteins [BR:tss03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     122672916
   HDAC complexes
    Sin3A-HDAC complex
     122672916
    BRAF-HDAC complex
     122672916
    REST complex
     122672916
    SHIP complex
     122672916
    MiDAC complex
     122672916
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     122672916
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122672916
  Chromatin remodeling factors
   NuRD complex
    122672916
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 122672916
NCBI-ProteinID: XP_043726357
LinkDB
Position
8:complement(13382604..13390979)
AA seq 550 aa
MEETSEGASLPSGPDGKKRKVSYFYEPSVGNYYYGQRHPMKPHRIRMAHNLIIRYSLHRL
MEVNRPFPAGVDEIRRFHSDDYVEFLSSVTPETFHDHTHSRLLQRFNIGVDCPVFDGLFP
FCQASAGGSIGAAVKLNRGDADIALNWAGGLHHAKKCEASGFCYVNDIVLGILELLKVHR
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGHLKDTGVGPGKYYALNVPL
NGGMDDDSFRSLFRPIIQKVIEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
RSFNFPLMVLGGGGYTLRNVARCWCYETAVAVGVEPENKLPYNDYYEYFGPEYTLHVEPS
NMENQNSPKDLEKMRNLLLEHLSRITHAPSVQFQARPPDTQVPDEGEEDMDQRPKPRIWG
DEDIGSESEDDEKPRLEKSNMGDQSLVDTGIRKYMKNRDKIIKSEDDEKSCHENSSIVDE
SLADTAIRKYMKNRDKIIKSEDDEKPRHENSSIVDESLADTAISDVKEETTEEKEVKEEN
PPSAEMAGAQ
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggaggagacctcagaaggggcgtctctgccatcagggcctgatggaaagaagaggaag
gtgagctacttctacgagccgtcggttgggaattattactacggacagcggcacccgatg
aagccccataggatcaggatggcccacaacctcatcatccgctattccctccaccgtctg
atggaggtcaaccgcccgttccccgccggcgtcgacgaaatccgacgcttccactccgac
gactatgtggaattcctgtcgtccgtcacacccgaaaccttccatgaccatacccactct
cgcctcctccagcgcttcaacatcggcgtggactgtccagtctttgatggtctcttcccc
ttctgccaggcctccgctggtggctccataggcgctgccgtcaagctcaaccgtggcgac
gccgacatcgccctcaattgggccggtggtttgcatcacgccaagaagtgcgaggcttct
ggcttctgttatgtcaacgacatcgttcttggcattcttgagcttcttaaggtccacagg
cgcgtgttgtatgtagatattgacgtccaccatggagatggagttgaagaggcattttat
acaacagacagagtcatgactgtttcttttcataaatatggggattttttccctggaaca
ggtcatctgaaggatactggagtgggcccggggaagtactatgctcttaatgtccctcta
aatggtggaatggatgatgatagcttccggagcctgtttcgtcctatcattcagaaagtc
atagaggtttatcagccagatgcagttgttcttcaatgcggcgctgattccttgtcaggt
gacagactgggatgcttcaacttgtcggtgaagggccatgccgactgccttcgtttcctt
agatccttcaatttccctctgatggtcttgggtgggggaggttatacactccgtaatgtt
gctcgctgctggtgctatgagacagcagttgccgttggagtggaacctgaaaataaactt
ccttataatgattactatgagtactttggccctgagtatactcttcatgttgaaccaagc
aacatggagaaccaaaattcaccaaaagatttggagaaaatgaggaatctgttgttggag
cacctatcaaggataacacatgctcccagtgtacagtttcaggcacgaccccctgatact
caagttccagatgagggagaggaggatatggatcaaagaccgaaacctcgcatttggggt
gatgaagatatcggatctgaatcagaggatgatgaaaagcctcgccttgaaaagtccaat
atgggtgatcagtctctggtagacactggcataaggaagtacatgaaaaatcgtgacaaa
ataattaaatcagaggatgatgaaaagtcttgccatgaaaactccagtattgttgatgag
tctctggcagacactgccataaggaagtacatgaaaaatcgtgacaaaataattaaatca
gaggatgatgaaaagcctcgccatgaaaactccagtattgttgatgagtctctggcagac
actgccataagtgacgtgaaagaagaaaccacagaggaaaaagaagtcaaagaagaaaat
ccaccatctgctgaaatggctggagctcaatag

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