Trachemys scripta elegans (red-eared slider): 117867254
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Entry
117867254 CDS
T07347
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117867254 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117867254 (PRPF4)
Spliceosome [BR:
tst03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117867254 (PRPF4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
117867254
NCBI-ProteinID:
XP_034608021
LinkDB
All DBs
Position
17:6221647..6252004
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AA seq
540 aa
AA seq
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MASSRASAMRVAPGRAPLPQPGPAPSPRATKNKLSEDSDAPPPKRSHIFYGSLEEKERER
LAKGESGLLGRERVKAAIEAGNINITSGEVFDLEDHISERQAEVLAEFERRKRARQINVS
TDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEY
QQTWYHEGPNSLKIARLWIANYSLPRATKRLEEARLYKEIPEATRTSQKQELHKSLRSLN
NFCSQIGDDRPISYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHNTNVGAIVFH
PQATVSLDKKDINLASCAADGSVKLWNLESDEPVADIEGHTMRVARVMWHPSGRFLGTTC
YDHSWRLWDLQAQEEILHQEGHSKGVYDIAFHIDGSLAGTGGMDAFGRVWDLRTGRCIMF
LEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRKCVYTIPAHQNLVTGVKFEPTHG
NFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcgcgggcctccgcgatgcgtgtcgccccggggcgggcaccgcttcctcag
ccgggcccggctccatccccgcgggcaacaaaaaacaagctctcagaggacagtgatgct
cccccacccaagagatcccatatcttctacggcagtttggaggagaaggaaagggaacgt
cttgccaaaggagaatcagggctgctgggaagagagagagtgaaagctgcaattgaagca
ggcaatattaacataaccagcggtgaggtctttgatcttgaagaccacataagtgagcgt
caggcagaagtgttggctgagtttgagcgcaggaagcgtgccaggcagatcaacgtttcc
acagatgactctgaagtcaaggcgtgcctacgagcacttggggagcccatcacgctcttt
ggagaggggcctgcagaacggagagaaagattgagaaatatcctctcggtggttggcaca
gatgccttaaaaaagaccaagaaagatgatgaaaaatctaagaaatccaaagaagagtat
cagcaaacttggtaccatgaagggcccaacagcctgaaaatagctaggctgtggatcgcc
aactactcgctccccagggcaacaaagcggctggaagaagcccgtctgtacaaagagatt
ccagaggcgaccaggacatcccagaagcaagaactgcacaaatccttgaggtccttgaat
aatttctgcagtcagattggagatgaccgcccgatatcttactgccatttcagtcccaat
tccaaactcctcgctacagcctgctggagtggcctgtgcaaactctggtctgtgcctgac
tgcaatcttgttcatactttacgagggcacaacaccaacgtaggagcaatagtgttccat
ccccaggctactgtctccctggacaagaaggacatcaacctggcctcttgtgcagctgat
ggctctgtcaaactctggaaccttgaaagtgatgaaccggtggcagatatcgagggccat
acaatgagagtggcacgagtgatgtggcatccttctgggaggttcctgggcaccacttgc
tatgatcactcctggcgcctctgggacctgcaagctcaagaggagattctccatcaggag
gggcacagcaagggggtctatgacatcgccttccacattgatggctctcttgctgggact
ggtggcatggatgcctttggtcgggtgtgggatctacgtactgggcgctgtatcatgttc
ctggagggccacctgaaggaaatctatgggattaacttctccccaaatggatatcacata
gcaactgggagcggggacaacacatgcaaagtgtgggacctccgccagaggaagtgtgtc
tacaccatacctgcccaccagaacctggtgacgggagtgaagtttgaacctacgcatggt
aacttcctgctcaccggtgcttatgataacacagccaagatctggactcacccaggctgg
tcccctctgaaaacgctggctggccacgagggaaaagtaatgggattggatatctcctca
gatgggcagctaatagcaacatgctcatatgacaggaccttcaagttgtggatggcagag
tag
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integrated database retrieval system
