Trachemys scripta elegans (red-eared slider): 117867353
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Entry
117867353 CDS
T07347
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03030
DNA replication
tst03420
Nucleotide excision repair
tst03430
Mismatch repair
tst03440
Homologous recombination
tst03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117867353 (RPA1)
03420 Nucleotide excision repair
117867353 (RPA1)
03430 Mismatch repair
117867353 (RPA1)
03440 Homologous recombination
117867353 (RPA1)
03460 Fanconi anemia pathway
117867353 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117867353 (RPA1)
03032 DNA replication proteins [BR:
tst03032
]
117867353 (RPA1)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117867353 (RPA1)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117867353 (RPA1)
DNA replication proteins [BR:
tst03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117867353 (RPA1)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117867353 (RPA1)
MMR (mismatch excision repair)
117867353 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
117867353 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
117867353
NCBI-ProteinID:
XP_034608157
LinkDB
All DBs
Position
18:648576..687308
Genome browser
AA seq
616 aa
AA seq
DB search
MSARLSEGAIAAIMQGENNLKPVLQVINIRAIATGNGPSRYRVLMSDGVNTLSSFMLATQ
LNSLIEEERLSAHCICQVNRYIVNSLKDGRRVIILMDLDVLKTADVVGANIGNPVPYNEG
QGHQQQRSSVPAASPTHSKPQQQNGNSAVGPTTTKYLGPSKQFGKAGGTSFLSTPGGSQS
KVVPIASLNPYQSKWTICARVTQKGQVRTWSNSRGEGKLFSIELVDESGEIRATAFNDQV
DKFFPLIELNKVYYFTKGHLKTANKQYTAVKNDYEITFHNETSVVPCEDAQHLPSVQFEF
VPISDLENTCKDSIVDIIGVCKSYEDISKITVKSSNREVSKRNVHLMDTSGKMVTATLWG
DEAERFDGSRQPVVAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLL
ECTSISDLRGGPTIGGNTNWKTLHEAKSENLGQGDKADYFSCVGTVVFLRKENCMYQACP
SQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADCQENQWVTCFQESAEVILGQ
NAAFLGELKEKNEQAFEEVFQNANFSSYEFRIRVKLETYNDESRIKATVMDVKPVNHKEY
SKRLIMNIRKNAVQLG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcggctgagcgagggggccatcgcggccataatgcagggagaaaataattta
aagcctgtcctccaagtcattaacatccgtgccatcgccacaggaaatgggccatctcgt
taccgtgtgctgatgagcgatggggtgaacacgctttcctctttcatgttggctacacag
ctgaattctctaattgaagaggagcgcttgtctgcccactgtatctgccaggttaacaga
tacattgttaacagcctgaaagatggaaggagagtgattatattgatggatttagatgtt
ctgaaaacagctgatgtggttggtgcaaatattggcaatccagtaccatacaatgaagga
caggggcaccagcagcaacgttcctcagttccagcagccagcccaacacacagcaaacca
cagcagcagaatggaaattcagcagtaggccccactactactaagtaccttggtccctca
aagcagtttggtaaagcaggtggtactagcttcttgagcacccctggtggatcacagtcc
aaagtggtaccaattgccagtctgaatccataccaatccaaatggaccatttgtgctcgt
gttacccaaaaaggccaggttcgcacatggagcaactcccgtggtgaaggaaagctgttc
tctatagagctggttgatgaaagtggtgaaattagagctactgctttcaatgatcaagtg
gacaagttctttcccctcattgaattgaacaaggtgtattacttcaccaaaggccatctg
aagacggctaacaagcagtacacagctgtgaaaaatgactatgagatcacattccataat
gagacttctgttgtaccgtgtgaggatgctcagcaccttccttcggttcagtttgagttt
gtgcccatctctgacttggagaacacatgcaaagactcaattgtcgacataattggagtc
tgtaagagctatgaagacatctctaaaattacagtgaaatctagcaatagagaggtgtcc
aagaggaatgtgcatttgatggatacatctgggaagatggtgacagctactctgtgggga
gatgaggctgaaagatttgatggttctagacaacctgtggtagccatcaaaggagccaga
gtctctgatttcggtggccggagtctctctgttctgtcctcgagcacggttgtggtgaac
ccagatagtccagaggcatttaagctccgaggatggtttgactctgaagggcagcttttg
gaatgtacctcgatctctgatctgagaggtggaccaacaattgggggaaataccaactgg
aaaactttgcatgaagctaaatctgaaaatttgggacaaggagataaggcagattatttt
agctgcgtgggcacagtggtattcctgcgcaaagagaactgcatgtaccaggcatgtccc
tctcaggactgcaataagaaagtgatagaccaacaaaatggactgtatcgctgtgagaaa
tgcgatcgcgagttccccaacttcaagtatcgcatgatactctcggtgaacattgcagac
tgtcaggagaatcagtgggtgacttgttttcaggagtcagcagaggtcattcttgggcaa
aatgctgctttcctgggagaactgaaagaaaagaatgagcaggcatttgaggaagtgttc
caaaatgccaacttcagctcatacgaattcaggatcagagtcaagctggagacttacaat
gatgaatctcgtattaaagccacagtaatggatgtgaagcctgtgaaccacaaagaatac
agcaagaggctgatcatgaacatcagaaaaaacgcagtgcagctaggataa
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integrated database retrieval system
