Trachemys scripta elegans (red-eared slider): 117867410
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Entry
117867410 CDS
T07347
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117867410 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117867410 (PRPF8)
Spliceosome [BR:
tst03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117867410 (PRPF8)
Complex C
U5 SnRNP specific factors
117867410 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117867410
NCBI-ProteinID:
XP_034608301
LinkDB
All DBs
Position
18:complement(496770..529290)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGGCAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETCEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggctggagtgtttccctaccgtgggggctgtgccccggtgcccagtcccttggctccg
ctgcctgactacatgtctgaagagaagctgcaggagaaagcccgtaaatggcagcagcta
caggcaaagcggtatgccgagaagagaaagtttggttttgtggatgcccagaaggaggac
atgcccccagaacacgtgaggaaaattatccgggaccatggtgacatgacgaacaggaag
tttcggcatgacaaacgggtttatctgggtgccctgaagtacatgccccatgctgtccta
aagctcttggagaacatgccaatgccctgggaacaaatccgagatgttccggtcttgtac
cacatcactggtgctatctccttcgtgaatgagattccatgggtcatagaaccagtctac
atctcacagtgggggtcaatgtggatcatgatgagacgagagaagagagacaggcgtcac
ttcaaaaggatgaggttccccccatttgatgatgaagagccccctcttgactatgctgac
aacatcctggatgtggagcctctggaggcaatacagcttgagctggacccagaggaagat
gcccctgtcctggattggttctatgaccaccagccattgaaagacaacaggaagtatgtg
aacggttctacgtaccagcggtggcaattcactcttcccatgatgtccacattataccgg
ctagctaatcaactgctgacagatcttgtggatgacaactacttctacctgtttgatctg
aaggccttcttcacttccaaggctctgaacatggctattcctggggggcccaagttcgag
cctctggtccgagatattaacctgcaggatgaagattggaatgaattcaatgacatcaat
aaaataataatcagacagccaatcaggacagagtacaagattgcctttccatacctgtac
aacaacctaccgcatcacgtgcacctgacctggtatcacactcctaatgtggtcttcatt
aaaacagaggatcctgacctgccagcattttactttgatccattgatcaatcccatctct
cacaggcactctgtcaagagtcaggaacccttgcctgatgatgatgaagagtttgagtta
ccagaattcgtggagcctttcctgaaggacactccgctgtacacggacaacacggccaat
ggcattgcactgctgtgggcccctcgaccctttaacttaagatctggcaggacacgcaga
gctctagacatcccattggtcaagaactggtatcgagagcactgcccagcagggcagcca
gtgaaagtgagggtctcctaccagaagctgctgaagtactatgttctgaatgcactcaag
cacaggcctcccaaggctcagaagaagaggtacctattccgctccttcaaggcaacaaag
ttcttccagtcaacaaagctggactgggtggaggttggcctgcaggtgtgccgccagggt
tacaatatgctgaacttgctgattcataggaagaacctcaactatctccatctggactac
aatttcaacctcaaaccagtcaagaccctcaccaccaaggaaagaaagaagtctcgtttt
ggtaatgctttccatctgtgccgagaggttctgcgtttgaccaaactggtggtggatagc
catgtccagtacagattgggaaatgtggatgcatttcagttggcagatggcttgcagtat
atctttgcccatgtgggacagctgacaggaatgtacaggtacaagtacaaactgatgagg
cagattcgtatgtgcaaggacctgaagcatctcatctactacagatttaacactgggcct
gtggggaaggggcccggctgtggcttctgggctccaggctggagagtatggctgttcttc
atgagaggcattaccccactattggagcggtggctgggcaacctgctggccaggcagttt
gaaggccgacactcaaagggcgttgcaaagactgtaacaaagcagcgtgtggaatctcac
tttgacctggagctgagagctgcagttatgcatgacattctagacatgatgccagagggg
atcaagcagaacaaagctcggaccatcctgcagcacttgagtgaggcctggaggtgctgg
aaggccaacatcccctggaaggttcctgggctgccaactcctattgaaaacatgatcctg
agatacgtgaaggcgaaagctgactggtggactaacacagctcactacaacagagagcgg
atccgccggggtgccactgtggacaagactgtgtgcaagaagaacctgggtcggctgacc
aggctctacctgaaagctgagcaggagaggcagcataattacttgaaggatggcccctac
atcactgcggaggaggctgtcgcagtatataccaccactgtgcactggctggaaagcagg
aggttctcacccatccccttccctccgctctcctacaagcatgacaccaaactactcata
ttggccttggaaaggctgaaggaagcctacagtgtgaaatcccgtctgaatcagtcgcag
agagaggagttgggtcttattgagcaggcgtatgataatccccacgaagctctgtccaga
atcaagcgacaccttctgactcagagagcctttaaagaggttggtattgagttcatggac
ctctacagtcacttggttcctgtttacgatgttgaacccctggagaagattacagatgcc
tatctggatcagtacttgtggtatgaggctgacaagcgaagactcttccctccttggatc
aaacctgcggacactgaaccgcctccactgctggtgtacaaatggtgccaaggcattaac
aatctgcaggatgtctgggaaacatgtgagggtgaatgtaatgtgatgctggagtcccga
tttgagaagatgtatgagaagattgatttgacgctgctcaacaggctcttgcgtcttatc
gttgatcataacattgctgactacatgacagctaagaacaatgtggtgatcaattacaag
gacatgaaccacaccaactcctatgggattattcgggggttgcagtttgcttccttcatc
gttcagtattatgggctggtgatggacctgttggtactgggccttcaccgagccagcgag
atggctggcccaccacagatgccaaatgacttccttagcttccaagatattgccactgag
gtggctcatcccatccgcctcttctgcagatacattgatcgcattcacatcttcttcagg
tttacagcagatgaggcaagggacttgatccagcgctacctgacagagcatccagatccc
aacaatgagaacattgtgggctacaacaataagaagtgctggccccgagatgcccggatg
cggctcatgaaacacgatgtgaatcttggccgtgctgtattctgggacattaagaatcgc
ctgcctcgctcagtcaccacagtgcagtgggagaacagctttgtatctgtttatagcaag
gacaatcccaacctgctgttcaacatgtgtggctttgagtgccgcatcctacccaagtgc
cgcaccagctatgaggagttcacccacaaggatggtgtgtggaacctgcagaatgaggtg
accaaggagcgcacagctcagtgctttctgcgtgtcgatgatgagtctatgcagaggttt
cacaaccgagtgaggcagatactcatggcctccggctccacaaccttcacaaagattgtg
aacaaatggaacacagccctgattggcctgatgacgtatttccgggaggctgtcgtgaac
acgcaggagctgcttgacctgctggtgaagtgtgagaacaagattcagacccgaatcaaa
attggcttgaactccaagatgccaagccgcttccccccagtggtattctacacccccaaa
gagctgggggggttgggcatgctgtccatgggccatgttcttatcccccagtctgacctg
agatggtccaagcagacagatgtcggcatcactcacttccgctcagggatgagccatgag
gaagaccagctgatcccaaatctgtaccgctacatccagccatgggagagcgagttcatt
gactcgcagagagtgtgggcagaatacgccctcaagaggcaggaggctattgcccagaac
aggcgtctgactctggaggatctagaggactcatgggacagagggattcctcgcattaat
accctcttccagaaagaccggcacacccttgcttatgataaaggctggagggtcaggaca
gacttcaaacagtaccaggtcctgaaacagaacccgttttggtggacacatcagcgccat
gatgggaagctctggaacttgaacaactaccgcacagatatgatccaagcactgggtgga
gtggaggggatcctggagcacaccctcttcaagggaacctacttcccaacctgggagggt
ctcttctgggagaaggccagtggctttgaggagtcaatgaagtggaagaagttgacaaat
gcccaaagatcgggtttgaaccagatccccaacagacgattcaccctctggtggtctcct
accattaacagagccaatgtgtatgtcgggtttcaggtgcaactggatttgacaggtatc
ttcatgcatggcaagatccccacattgaagatttccctcattcagatcttccgagcccac
ttgtggcaaaagattcacgagagcattgtaatggatttgtgtcaagtgttcgatcaggag
ctggacgctctagagattgagactgtgcagaaggagaccatccaccccaggaagtcctat
aagatgaactcctcctgtgcagatatcctcctctttgcctcctataaatggaatgtgtca
cggccgtcgctgcttgcagactctaaggatgtgatggacagtaccaccactcagaaatac
tggattgatatccagctgcgctggggcgactatgactcccacgacattgagcgctatgca
agagccaagttcctggattacaccacggacaacatgagtatctacccctcccccactggc
gtgctcattgctattgacctggcctataacctgcacagtgcttatgggaactggttccct
ggaagcaagcctctgattcagcaggccatggccaagattatgaaggcaaacccggcactg
tacgtactgagggagcgtatccgcaaggggctgcagctttactcatcagagcccacagaa
ccctatctctcctcccagaactatggggagctcttctccaaccagatcatctggtttgta
gacgacaccaacgtgtacagagttaccattcacaagacctttgaagggaacttgaccaca
aagcccatcaatggggccattttcatcttcaatcccaggactgggcaactcttcctaaag
atcatccatacatctgtgtgggcaggacagaagcgtctgggccagctggccaagtggaag
actgctgaggaagtggctgccctgattcgctccctccctgtggaggagcagcccaagcag
atcatagtcaccaggaagggcatgctggacccacttgaggtgcacttgctggatttccca
aacattgtcatcaaaggatcagagctgcagctgcccttccaggcctgcctgaaagttgag
aagtttggagatctcatcctgaaggctactgagccccaaatggttctcttcaatctttat
gatgattggctgaaaaccatctcctcctatacggcattctcacgtctgatcctgattctc
cgggcactgcatgtaaacaatgaccgtgccaaagtgatcctgaaaccagacaagaccacc
ataacggagcctcaccacatctggcccaccctgacagatgaggagtggatcaaagtggag
gtgcagctcaaggacctgatcctcgctgactatgggaaaaagaacaacgtgaatgtggca
tccctgacgcagtcggagatccgagatattatcctggggatggagatctctgccccctct
cagcagagacaacagattgcagagattgagaagcaaaccaaggagcagtcgcagctgacg
gccacgcaaacccgcactgttaataagcatggtgacgaaatcatcacctccacgaccagc
aactatgaaactcagaccttctcctccaagacggagtggcgagtccgagcaatctctgct
gccaatctccacttgagaacaaaccacatctatgtctcgtctgatgacatcaaggaaacg
ggctacacctacatccttcccaagaatgtgctgaagaaattcatctgcatctcagacctc
agggcccaaattgcagggtacctgtatggtgtgagccctccagataatccccaagtgaag
gagatccggtgcattgtgatggtgccccaatggggaactcatcagacggtgcatctccct
ggccagctgccgcaacatgagtacctcaaggaaatggagcccctggggtggattcacacg
caaccgaatgagtcccctcagctctcgccgcaggatgtcaccacacatgccaaggtcatg
gctgacaatccctcatgggatggggagaaaaccatcatcatcacctgcagttttacccca
ggctcctgtactctgaccgcctacaagctgactcccagtggctatgagtggggcaggcag
aacacagacaaaggaaacaaccctaagggttacctgccatcccactatgagagggtgcag
atgttgctgtcagaccgcttccttggcttcttcatggtaccagcacagggatcctggaac
tacaacttcatgggtgttcgtcatgatcccaacatgaagtatgagctgcagctagcgaat
cccaaggagttttaccatgaggttcatcgcccatctcacttcctcaacttcgccttgttg
caggaaggggaggtctactctgcagaccgagaggatctctatgcatag
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integrated database retrieval system
