Trachemys scripta elegans (red-eared slider): 117867597
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Entry
117867597 CDS
T07347
Symbol
RNF43
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117867597 (RNF43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117867597 (RNF43)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117867597 (RNF43)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117867597 (RNF43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
KIAA1549
DUF5305
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
117867597
NCBI-ProteinID:
XP_034608675
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All DBs
Position
18:23510901..23629643
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AA seq
822 aa
AA seq
DB search
MSAGPQLQLAVLWPWLLMATLQVGLGHTGLALAAESERSAAQKAIIRVIPLKVEPITLEG
VFANVAEVTPAEGKLLQFHPLSLCNTSEDEHTGSGFVTIVKLERPDRDLHPCLSLANKAK
LAGERGARAILFDITDDESAADQLRKPRGLSQPVVLIRGHDAELLMGVVNKNREAHVKIE
VKEQPAWPDYDVWILLTVLSTVIVIVLIFVVRTKCHWNRTQDSLQQQTMQAISQLATRKY
QARCRQATLRDSASSCSSAPVCAICLEEFSEGQELRIISCSHEFHRECVDPWLQQHHTCP
LCMFNIIEGAAFAQPAHLRQNSQDLEPGRRLHLFRQHPGHALYHLPEAHPQQRLRNFASQ
LPHGNPFFHSPELSQLDFSTMHYLPYRPVGSRATCSHQPSLAQGLGNEQHRKSPACGQMP
SSHRTCPLQHQARCLGYRTAVVPRQHHAAPLRRGTSHGRQHNSSASGESYLTEPSGYLAD
GPGSDSSSGPCHGSSSDSMLNCTDVSLQGIHGSCSTFRSSLSSDYDPWVYCSSTDNGQEQ
LQPPGEPRPRSLDLKETGSTALAKNQTLSHVHYHHHRHHHYRKDLECPSGRSGQEPSQRK
PRFAGAVPSARTQKRTEKTRHCKQPLESSPVSQAASLSGQLSCVHQGPDLSKHLSSSADG
SDFSWVASRQAGAAGSLSFPLSQKHGLQSRHHRRKRKCRPEPVLAHLSEDSDVHKDCNVH
IHYGHSPGYCCSPEVQPLLPTAPMPYCSGSQVVWKCRVPPSHLESQQQDKDLSEWEGKPM
YPVDFSGTGTTEDNTSLYLPCQTLQHNQGSKEEIQDVYEHSV
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctggcccccagctgcagctggctgtcctctggccttggctgctaatggctaca
ctgcaggttggacttggccatactgggctggcactggcagcggagtcggagaggtcagca
gcacagaaggctattattagggtgatccccttaaaagtggagccaatcacattggaagga
gtgtttgctaatgttgctgaggttactccagcagaaggaaaattgctgcagttccacccg
ctgtctctgtgtaacaccagtgaggacgagcacaccggctccggctttgtcactattgtc
aaactcgagcggcccgatcgagatctgcacccctgtctgtcattggccaacaaggcgaag
ctagcaggggagcggggggctcgtgccatcctcttcgacatcacagatgatgaaagtgct
gctgaccagctgaggaaacccaggggcctgagtcagcctgtggtgttgatccggggccat
gatgctgagcttctgatgggcgttgtgaacaagaatcgagaagcacatgtgaagattgag
gttaaagagcagccagcatggccagactatgatgtgtggattcttctcacagtgctgagc
actgtcattgtgatcgttctgatttttgtcgttcgcaccaagtgtcactggaacaggact
caggactccttgcagcagcagaccatgcaggcgatcagccagttggccacccggaagtac
caggcccggtgccgacaggccaccctaagggattcggccagcagctgcagctcagccccc
gtctgcgctatctgtctggaggagttcagcgagggccaggagctgcggattatttcctgt
tcccatgagttccacagagagtgtgttgacccctggctgcagcagcaccacacctgcccg
ctctgcatgttcaatatcattgagggggctgcctttgcccaacctgcacatttgaggcag
aattcccaggatctggaacctgggcggcggcttcacctcttccggcaacacccaggacac
gccctgtatcacctcccagaggcccacccccagcagcggctcaggaactttgcttcgcag
ctcccccatggcaaccccttcttccattccccagagctctcccagttggatttcagcacc
atgcactatttgccatacaggccagtgggctccagggccacatgcagccatcagccctct
ctagcccaaggcctagggaatgagcagcaccgaaaatctccagcatgtgggcagatgcca
tcttctcacaggacctgcccacttcagcaccaggcccgttgcctgggatacaggactgcg
gtagtaccgagacagcaccacgctgcccctcttcgtcggggaaccagtcatgggagacag
cacaacagcagtgcctcaggggagagctatctcacagagcccagtgggtacctggctgat
ggtccgggcagtgactccagctctggaccctgtcatggctcctccagtgattctatgttg
aattgcacagatgtcagcctccaaggcatccatggcagctgctccaccttccgcagctcg
ctgagcagtgactatgacccctgggtgtactgtagctccactgacaatggccaggagcag
ctgcagcctccaggggagccaaggccgaggtctttggacttgaaggagactggcagcact
gcattagccaagaatcagacactaagtcatgtccattatcaccaccacaggcaccatcac
tacaggaaagacctagagtgtccatctgggagatcaggccaggaacccagccagcgtaag
ccccggtttgctggggctgtgcccagtgctcggacacaaaagaggactgagaaaacgcgt
cactgcaaacagcctcttgaaagcagcccagtgtcccaggctgcatctctgtcaggacag
ctctcctgtgtgcatcagggacctgacctctcaaagcacctctcctcttctgcagacggg
tctgacttcagctgggtggccagtaggcaagctggagcagctggttcattgtctttcccg
ctgtcacagaaacatggcttacaaagccgtcaccacagaaggaaacggaagtgccgcccg
gagcctgttctggctcacctttcagaggactcagatgtgcacaaagactgcaatgttcac
attcactatggccactcccctggctactgctgctccccagaagttcagccactgttgcca
acggcccctatgccctattgctcaggctctcaggtggtttggaagtgccgagtcccgccc
tcccacttggagtcccagcagcaggacaaggatctatcagaatgggaggggaaacccatg
tatccagttgatttctcagggacaggcaccacagaagacaacacaagtctttacctcccc
tgccaaactctgcaacacaatcagggatccaaggaggagatccaagatgtgtacgaacat
tctgtttaa
DBGET
integrated database retrieval system
