Trachemys scripta elegans (red-eared slider): 117867670
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Entry
117867670 CDS
T07347
Symbol
RABGEF1
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117867670 (RABGEF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117867670 (RABGEF1)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117867670 (RABGEF1)
Protein recycling
Other Rab GTPase associated proteins
117867670 (RABGEF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
BTB_2
DUF5601
zf-A20
DUF1639
BTB_3
Bac_RepA_C
DAXX_hist_bd
Motif
Other DBs
NCBI-GeneID:
117867670
NCBI-ProteinID:
XP_034608772
LinkDB
All DBs
Position
18:complement(12531441..12604386)
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AA seq
1053 aa
AA seq
DB search
MVVVTGQNKASGNLDDAMSSSDAEDDFQDPATPTATQAGHSLPLLPQQFPEVVPLNVGGM
YFATRLSTLRRYEDTMLAAMFSGRHYIPTDAQGRYFIDRDGTYFGDVLNFLRSGDLPSRE
RVRSVYKEAQYYSIGPLLDNLEEVQPLKGEKVRQAFLGLMPYYKEHLERIIEIAKLRAMQ
RKARFAKLKICVFKEEMPITPYECPLFNSLRFERSESETKLFEHHCEVDVSFGPWEAVAD
VYDLLHCIVTDLSDKGITVDHQCIGVCDKHLINHYYCKRPIYEFKITWWVTLPVPPQTTW
TPHRCVSLETTRRTIWWMRKRRRMGSILPESQKIFLTLEPCRSQDITVANRDAGEGISAE
NVSFGTSSTLESRLSLIRRRQKRTREDMFTEIMNASGTADTELRGWRISLSEKLDMDRES
RKASTEQECAAQDEMLRIVTKQASSCSGSSCHKLDDAETRSKKLNGSAELHVLNNSNAAQ
FISPEFTKKPTPQAQPTQQPLLMSVAPPCRSYPEVTPLHARTRADAGAGALPNRSEGRSV
AFAGGAAGAGLRRRRRPGEPEEMSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKC
WREEYHKARQKQIQDDWELAERLQREEEEAYASSQSTQGAQSLTFSKFEEKKTNEKTRKV
TTVKKFFSASSRTGAKKDIHEAKAPSPSINRQVSIETDRASKEFIEFLKTYHKSGQEIYK
QCKMFLEAMHHKRELSIEEQSECAQDFYQNIGEKLQTRSKVSPEKVEKTMDQIEKYIMTR
LYKYVFCPETTDDEKKDLVVQKRIRALHWVTPQMLCVPVNEEISEVSDMVVKAITDIIEM
DSKRVPRDKLACITQCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYI
TRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPKKQESEN
WSSDVCLGVKQMYKNLDLLSQLNERQERIVSEAKKLEKDLIDWTDGITKEVQDIVEKYPL
EINPKNQPLAAIDSENVENDKLPPPLQPQVYAG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggtggtagtcacagggcagaacaaagccagtggaaatctggacgatgccatgtcgagt
tcagatgcagaggatgatttccaagaccctgccactcctactgcaactcaggcagggcac
tcgctgcctctgctgcctcagcagttcccagaagttgttccgcttaatgtaggaggcatg
tatttcgctaccaggctgtcaacactaagacgctatgaagataccatgttggctgctatg
tttagtggaagacactacattccaacagatgctcaaggcagatattttattgacagagat
ggaacttactttggagatgttcttaactttctgcgatctggtgacctgccatcgagagaa
cgagtgaggtcagtttacaaggaagctcaatattattccataggaccattgctggacaat
ctagaggaagtccagcctcttaagggagaaaaagttagacaagctttcctgggcttaatg
ccatattacaaagaacacttggagcggataattgaaatagctaagcttagagccatgcag
agaaaagcaagatttgcaaagttgaagatctgtgttttcaaggaagaaatgcccatcacc
ccatatgagtgtccacttttcaactctctacgttttgaaagaagtgaaagcgagacaaaa
ctgtttgaacatcactgtgaagtagatgtatcttttggcccctgggaggctgtagctgat
gtatacgatcttctgcactgtattgtgacagacctgtcagacaagggaattactgtggat
catcagtgcattggtgtgtgtgataaacatctgataaaccattattactgcaagcgcccc
atctatgaattcaagattacttggtgggtgaccctaccagtaccgccacaaacaacgtgg
acacctcacaggtgtgtgagtctagagacaacaaggaggacgatatggtggatgaggaag
aggaggagaatgggatccattctccccgagagccagaaaatatttttaaccttggagccc
tgtaggtcacaggatatcacagtggccaaccgtgatgccggggaaggcatctctgctgaa
aatgtgtcctttggcacgtcatcaacacttgaaagcagactttcgctgattagaagaagg
caaaagagaacacgggaggacatgttcactgagataatgaacgcctctgggacagctgac
acagagctgagaggctggaggatttcactgtctgagaagttagacatggacagggagagc
aggaaagcttccactgagcaagagtgtgcggcgcaggatgagatgcttcggattgtgacc
aagcaggcatcctcttgttcaggcagctcttgccacaagctagacgatgctgaaactagg
agcaagaagcttaatggcagtgctgagctgcatgtgctcaataattcaaatgcagctcaa
ttcatttcaccagaatttaccaaaaaacccacaccccaggcacaaccaacccaacaacca
ctcctcatgtctgtggccccgccctgccggagctacccggaagtgacgccgctgcacgca
cgcacgcgcgctgacgccggggccggggccctgccgaaccggtctgaggggaggagcgtc
gcgttcgcaggcggcgcagctggagcggggctgagacgccgccgccgcccgggagagccg
gaagaaatgagcctaaagtctgaacgcagaggaattcacgttgatcagtcagagctactg
tgcaagaaaggatgtggttactatggaaaccctgcttggcagggcttctgctccaagtgc
tggagagaagagtaccataaggcaaggcagaagcagattcaggatgactgggagctggcc
gagcgacttcagcgtgaggaggaagaagcctatgctagtagtcagagtacacaaggggca
cagtcgctcaccttttccaagtttgaggaaaagaaaaccaatgaaaagacacgcaaggtg
acaactgtgaagaaattcttcagtgcgtcttccaggacaggagctaagaaggacattcat
gaagctaaggctcctagcccttcaataaacaggcaggtcagcattgagacagatcgagcg
tccaaggagtttatagagtttctcaagacctatcataaatctggtcaagaaatttataag
cagtgcaaaatgtttttggaagcaatgcatcacaaaagggaattaagtattgaggaacaa
tctgaatgtgcccaggacttctatcaaaacataggagagaaattacagacccgttcaaaa
gtttccccagaaaaagttgagaaaacaatggaccagattgaaaaatatatcatgactcga
ttgtataaatatgtgttctgccccgaaacaactgatgatgagaagaaagatctggttgtc
caaaagagaatcagggctttacactgggtaactccacaaatgctgtgtgttcctgttaat
gaagaaatttcagaagtctctgatatggttgtgaaagcaattacagatattatcgaaatg
gattcaaaacgtgtccctcgtgataaattagcatgcatcacccaatgcagcaaacatatc
ttcaacgctataaaaatcacaaaaaacgaaccagcttctgctgatgacttcttaccaaca
ctcatatatattgttttgaagggaaacccaccccgtctgcagtccaacatccagtatata
acccgcttctgtaatccaagcaggttaatgactggagaggatggctactattttaccaat
ctgtgctgtgctgtggccttcattgaaaaactggacgctcaatctttaaatctaagccag
gaggattttgatcgctacatgtcgggccaaacgtctccaaagaaacaagaatctgaaaac
tggtcatctgatgtgtgcctaggtgttaaacagatgtataaaaacttagacctcctctct
caattgaatgagagacaggaaagaattgtcagtgaagccaagaagcttgagaaagacctt
atagattggactgatggaattactaaggaagtccaagatattgttgaaaaatatccattg
gaaataaatccaaaaaatcaacccttagcagctattgactctgaaaacgtagagaatgac
aaattgcccccaccactgcagcctcaggtttatgctggatga
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integrated database retrieval system
