Trachemys scripta elegans (red-eared slider): 117867785
Help
Entry
117867785 CDS
T07347
Symbol
NPHP4
Name
(RefSeq) nephrocystin-4 isoform X1
KO
K16478
nephrocystin-4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tst03037
]
117867785 (NPHP4)
Cilium and associated proteins [BR:
tst03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
117867785 (NPHP4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
117867785
NCBI-ProteinID:
XP_034608938
LinkDB
All DBs
Position
19:2187294..2290540
Genome browser
AA seq
1455 aa
AA seq
DB search
MPRGRGDLLSSKMSEWQKIFVQNLTVPPHSQRKRHLPRESIAFQCVLKYVEGNLIKQRVL
EGLSEVEYQLRLSLFDITYRHFFGRTWKSTIRPLKAVPGQPPKVVFNETIYFHTSLNHPS
IVAVVEVVAAAKKREGTHQDLSCGFGILHLFNSKSEPTDVATKDRGLQLYHGTPRALLHP
LLQDPIEQNKYMTVIENTHLQYTLRPHPPLETVYHLFPENMLVSGLQKIPGLLLTHGETS
DFFRKPHLMKSVTWYLDKLSINLYPSLDKFEEELLDLLNSERLLKDSSTVDGSEVLIQER
RLHIGVHNGLCFVQMPQVVVLVPEAEVARGRSASFHRKQGLSAKPSTVGQALVLRSRIRL
TEMVRHPAFAIVFQLEYVFSAPSGADRRALSISSLTKAAYMHSIRWTVWNPLLDSSSTEV
ILPLQGGAQQNPSHVLVYKMPPTNMSSEEVKQVESGTVQFQFSTNSEEHLGTSANSLSNS
RAELLHSAKPSTPSLSAPSSPQMLVSTQDYPQGPGLSISQLSASPRSPPVSHSSKPPLKR
QTGSPVPRSPGMRRREHAQELPHGGSRGGITHLEADLNPSSLILDSSASDQLQELPFTPV
HAPIVAMGTQTGSSSSVLTRASLSRLHAAGFPEILDCNKEPAEVVDPADPVNFNPQREEA
DFLQSNEIILQFLAFTRIPQDGLGTTWPKTMYFTFQFYRFPPVTTPRLQLVKMDQSGTAS
SAASSHMLFQINKDGTLRSESPGLQLKYMVDPGFLKPGEQRWFIRYIADHNLQIDIWDGD
SLLLIGSAAVKLKHLLRQGRRAVQVHHELEVMTTEYEQDTTVMSGDVLRHGTVKPIGVYA
VVKGRLHLSLANVGHLCEQRLKKSNSLPPSRSRIVSSHDGTSNFHGGSLFSLNTPGAKNV
SQAQKLADVDSELAAMLFSRLQEVSTAFQHVSREASAIRRRKLERMMMVRQLEAQEDVSG
RRASRMGRREERIQHSRDLEIIDAYRERIKAESISSMLIQAITTNYTLYATLGTAEFFEF
ALRNPYNVQHTVTIEIDHPELSVIVDSREWRHFKELTQTMTTPVEEDMFHLQDNLMPQVY
LRPKETIHIPFKYQTFSVDHAVMMQQGPAELRFNKGTEAAPPWKSSAMLTKRIKISFKAN
GDKPIAILSVNVEPQPHVVDQTFRFYHPELTFLKKSIRLPPWYTLPGAPAGMPGGEPEMY
VRCSDPNIICETKKMGPGEPQDVFLKVAGGPSPQIKTFFVAIYTDAWLAAPIQIWQFYLH
SLQRVDVSCITGQQARLSLVLRGTQTIRKVRAYTSHTQELKVDPKGVFILPPNGVQDLHI
GVRPQKAGSRFVYLNLVDVEYHQLVSSWLVCVSCRQPVISKAFEITLPAGGGKGSNKRIT
YTNPYPSRRMYFLHTNRADLLQFKEDSFEIGGGEMYTIGLRFAPSQSTGEEEILIYINDH
EDKNEETFCVKVAYQ
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgcctagaggaagaggtgaccttctaagcagcaagatgagtgaatggcaaaagattttt
gtgcaaaatctgactgttcctccacactcccaaaggaaacgacatctcccgagggaatca
atagcatttcagtgtgtcctgaagtatgttgaggggaatttaattaagcagagagtgcta
gaaggcttgtcagaggttgaataccagctccgcctgtccctctttgacatcacgtatcgt
catttctttgggagaacatggaaaagtaccataagacctctcaaagctgtgccaggacag
ccacccaaagtggttttcaatgagaccatttattttcacacatctttaaaccatcccagc
atcgtcgccgtggtggaagtggtggctgcagccaagaagcgagaggggacccaccaggat
ctgtcttgtgggtttggaattctgcacctgttcaacagcaagtcagagccaacagatgtg
gccaccaaggacagagggctccagctgtatcacgggacaccgcgagcgctcctgcacccc
ctcctgcaggacccgatagaacagaataaatacatgacggtgatagagaacactcacctt
cagtacaccttaaggccacacccgcccctcgagaccgtgtatcacctcttccctgagaat
atgctggtgtctgggctgcagaaaattcctggcttgctgctaacacatggagaaacaagt
gatttctttcgaaaacctcatctcatgaaatcagtcacgtggtacttggacaaactgtcc
attaatttgtacccttctttagacaaatttgaggaagagctgctggatttactcaacagt
gagcgtttacttaaggatagctccacggtggatgggagcgaagttctcattcaggaacga
cggctgcacatcggggtccacaatggcttatgcttcgttcagatgcctcaggtggtggtg
ttggtgccagaggccgaggtggctcgggggcgctcggccagcttccacaggaaacaaggc
ctcagcgccaaaccaagcacggtaggtcaagctctggttttgagaagccgcattcgtttg
accgagatggtccgtcacccagcgttcgcaattgtcttccagctggagtatgtcttctct
gcaccaagtggagctgacaggagggcattgtccatttcctctttgactaaagcagcctat
atgcattccatccgatggactgtttggaatcctttgctggactcgagttccacggaagtg
atcttaccacttcaaggaggcgcccagcagaaccccagccatgtgttagtttacaagatg
ccacccaccaatatgagctccgaagaggtgaagcaggttgagtctggcacggtccagttc
cagttttccaccaattcagaggaacatctcgggacttctgcaaattccttaagtaacagc
agagcagagctcctccactcagcgaagccatccacaccatctctgagtgcaccatcttcc
ccccagatgttggtttccactcaagactatcctcaaggacctgggttgtcgatatcccag
ttgtctgcatcaccccgttctcctcctgtaagccactcgtccaaacccccgttgaaacgg
caaaccggctctccagtcccccgctcccctgggatgcgccgacgtgaacatgcacaggag
ctcccacatggaggcagccgcggtggcataacgcacttggaggctgacctcaaccccagc
tccttgatcctggattcctctgcaagcgaccagctgcaggagctgccattcacgcccgtg
cacgcgcctattgttgccatgggaacacagactggaagctctagctctgtcctcactcgg
gcctctctgtctcgcttgcatgccgctggctttccagaaatcctggactgtaacaaggag
ccagcagaagttgtggaccctgcagaccctgtgaacttcaaccctcaaagggaagaagct
gacttcttgcaaagcaatgaaatcattttgcagttccttgccttcaccaggattccacag
gatggcctggggacaacgtggcccaagactatgtatttcaccttccagttttaccgtttc
ccaccagtcacaacaccacgactgcagctggtgaagatggaccagtctgggaccgccagt
tcagctgcatcttcccatatgttattccagatcaacaaagatggaacccttaggagtgaa
tctccagggttgcagctgaagtatatggtggatcctggttttctgaagccaggagaacaa
cgctggtttatacgttatatagctgaccataacctacagattgatatttgggatggagat
tctttgctcctcattggatctgctgcagttaagctgaagcacttgcttcgccagggtcgg
agagcagttcaggtccatcatgagctggaggtgatgacaactgaatacgagcaggacaca
acagtgatgagtggggacgttctcagacatggcactgtgaagcccataggagtctacgct
gttgtgaaaggccgacttcacctgagtttggccaatgttggtcacctgtgtgagcagagg
ctgaagaaatcaaactccttgccaccctcccgctctcgcattgtctcctcgcatgatggg
accagcaacttccacggaggcagcttgttctccctcaatacgcctggagctaagaacgtc
tcccaagcccagaagctggcggacgtggacagcgagctggctgccatgctgttcagccgc
ctgcaggaagtgagcacggccttccagcacgtcagccgcgaggccagcgccatccgcagg
cggaagctggagaggatgatgatggtgcgacagctcgaagcccaggaggacgtcagtggg
aggagagcaagccgcatgggccggcgtgaggagcgcatccagcattccagggacctggag
attattgatgcctaccgggagcgcatcaaggccgagagcatctctagcatgctgattcag
gccatcaccaccaactacacgctctatgccacgctgggcacagcagagttctttgagttt
gccctgagaaacccatacaacgtccagcacacggtgacgatcgagatcgaccaccctgag
ctgagtgttattgtggacagtagggagtggagacacttcaaagagctgacccaaacaatg
actactccagtagaagaggacatgttccatcttcaggacaacctcatgcctcaggtctac
ctgcgccccaaagagaccattcacattccatttaaataccagaccttctctgtggaccac
gctgtcatgatgcagcagggccctgctgagctgagattcaataaaggcacagaagctgca
cccccttggaagtccagtgccatgctgacaaaacgcatcaagatctcctttaaggcaaat
ggtgacaaacccattgcaattctcagtgttaatgtggagcctcagccccacgtggtggat
cagacattccgattctatcacccggagctcaccttcctgaagaagtccatacggttacct
ccatggtacaccctgccaggtgccccagcaggaatgccaggtggggaaccggagatgtac
gtccgctgcagtgaccccaacatcatttgcgaaacaaaaaaaatgggtcctggggagcca
caggatgtgttcttaaaagtagctggaggaccaagcccacagatcaaaacattctttgtt
gctatttacacggacgcctggcttgctgctcccattcagatctggcaattttaccttcac
tcgctgcaacgtgtggacgttagctgcataactggccagcaggcccgcctttccttggtt
ctcaggggcacccaaacgatccggaaagtgagagcttacacctcgcatacacaggagctg
aaggtggatcccaaaggcgtgtttattctccctccgaacggggtgcaggacctgcatatc
ggcgtgaggcctcagaaagctggcagcagatttgtttacctcaatctggtggatgtggag
taccaccagcttgtttcgtcctggctggtgtgtgtctcctgccgacagcctgtcatttcc
aaggcatttgaaataacactccctgccggcggagggaaaggctccaacaagcggatcaca
tacacgaacccatatccctccaggaggatgtacttcctgcataccaaccgagctgacctg
ctgcagttcaaggaggattcctttgagattggaggaggggagatgtacacgattggcttg
cggtttgcaccaagccagagcaccggggaggaggagattctgatttatatcaatgaccac
gaagacaagaatgaagaaaccttctgtgtgaaggttgcctatcagtaa
DBGET
integrated database retrieval system
