Trachemys scripta elegans (red-eared slider): 117867912
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Entry
117867912 CDS
T07347
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117867912 (CLSTN1)
Cell adhesion molecules [BR:
tst04515
]
Cadherins
Cadherin related
117867912 (CLSTN1)
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Glyco_hydro_16
EphA2_TM
Toxin_R_bind_N
V_ATPase_I
PFF1_TM
Zip
Cadherin_C_2
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
117867912
NCBI-ProteinID:
XP_034609256
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All DBs
Position
19:complement(10661237..10723270)
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AA seq
980 aa
AA seq
DB search
MLHPGMLCPLLTPAWLLTTGLLCGGLWAARVNKHKPWIETTYHGIVTENDNTVLLDPPLI
ALDKDAPLRFAESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCEL
QKDYTFTIQAYDCGKGPDGTNAKKSHKATVRIQVNDVNEYAPVFKEKSYKATVIEGKRYD
NILKVEAVDADCSPQFSQICTYEIVTPDVPFAVDKDGYIKNTEKLNYGKERQYKLTVTAY
DCGKKRAAEDVLVKISIKPTCKSGWQGWSKRIEYEPGTGSLALFPNIHLETCDEPITSIQ
ATVELETNHIGKGCDRDTYSEKSLHRLCGVSSGTAELLPPPSSTANWTVGLPTDNGHDSD
QVFEFNGTQAVKIPDGIVTVNLKEPFMISVWMRHGPGTKEKETILCNSDKTDMNRHHYSL
YVHNCRLVFLFRQDPSEGKTYKPAEFHWKLNQVCDKEWHHYVLNVEFPTVTLYVDGISYD
PFPVTEDYPLHPSKIETQLVVGACWQEYTGNENDNETVPETSAGCWSGELHMAQFFRGNL
AGLMIRSGKLENKKVIDCLYTCKEGLDLQIADGIGKGMKINVNPSQSTLSLEGDDIDRFD
KAMQHISYLNSRQFPTPGIRRLKITSNVKCFNEEACIAIPFVDGYIMVLQPEEPKISLSG
INHFARSASEFESPEGVSLFPELRIISTITREVEPEGDGDEDPTVQESLVSEEIMHNLDT
CEVTVLGEELNQEQESLEVDMTQLQQKGIEMSSSNLGMIITGVDTMASYEEVLHLIRYRN
WHTVSLFDRKFKLVCSELNGRYVSNEFKVEVNVIHTANPVEHANHIAMQPQFVHPVHHSF
VDLSGHNLANPHPFSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEESEDGEEEDDITSAESESSEEEEGEQEE
DQQNVNRQQQLEWDDSTLSY
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaccccgggatgctctgcccgctcctaacccccgcctggctcctgaccactggg
ctgctttgcggcgggctctgggctgctagagttaacaagcacaagccatggattgaaacg
acatatcatggcatagttacagaaaatgacaacacagtactcctggatccccccttgata
gccctggataaagatgcacctctgcggtttgcagagagttttgaggtgacagtcaccaaa
gaaggtgagatttgtggatttaaaattcatgggcaaaatgtcccctttgatgctgtggta
gtggataaatccactggtgagggaataatacgctcaaaagagaaacttgattgtgaactg
cagaaggactacacattcaccatccaggcctatgattgtggaaagggaccagatggaact
aatgcaaaaaaatcccacaaagcaacagtacgtattcaggtgaatgatgttaatgagtat
gctccagtgtttaaagagaagtcctacaaagcaacagttattgaggggaagagatatgac
aacatcctgaaagtagaagctgtggatgcagattgttctccccagttcagccagatatgc
acctatgaaattgtaactccagatgttccctttgctgttgacaaagatggttatataaaa
aacacagaaaagttaaactatggcaaggagcgccaatataagctgactgtgacagcatat
gactgtggcaagaaaagagctgctgaggatgtattggtgaagattagcattaagcctaca
tgcaagtctggctggcaaggctggagcaaaagaatagaatatgagcctgggactggttct
ctggctctattccccaatatacatttggagacctgtgatgaacccataacttcaattcaa
gcaacagtggaactagagactaatcatattgggaaaggttgtgacagagatacttactct
gagaaatctcttcacagactctgtggtgtttcctctggcacagctgagctgcttccccct
ccaagtagcactgctaactggacagtaggacttcctaccgataatggccatgacagtgac
caagtctttgaatttaatggcactcaagctgtgaagattccagatggcattgtcacagtc
aatctaaaagagccctttatgatttcggtgtggatgaggcatgggcctggtaccaaggag
aaggagacaatactctgcaattcagacaagacagatatgaaccggcaccactactctctt
tatgtacacaattgccgacttgttttcctcttccgccaagatccttcagagggaaaaact
tacaaacctgctgaattccactggaaattgaaccaggtgtgtgacaaagaatggcatcat
tatgtcctcaatgttgaatttccaacagtgacactctatgtagatggaatttcatatgat
cctttcccagtgactgaggattacccactacatccttccaagatagaaactcagctggta
gttggagcatgttggcaagaatatacaggaaatgaaaatgacaatgaaactgtgcctgag
acatctgcaggttgctggagtggcgaacttcacatggctcagtttttccgaggcaatctg
gctggattaatgatccggtctggtaaactggagaacaagaaggtgatagactgcctctat
acctgcaaggaaggattagatttgcaaattgctgatggcattggcaaaggcatgaagatt
aatgtgaatcccagccagtcaacgttgtccttggaaggggatgatattgacaggtttgac
aaagccatgcagcacatttcctacctgaattcccgccagttcccaacacctggaatccgg
aggctcaaaatcaccagcaatgtcaagtgtttcaatgaagaagcctgcattgccattccc
tttgtggatgggtatataatggtcttgcagcctgaggaacccaagatcagcttgagtggc
atcaatcattttgcccgttctgcttcagagtttgagagtccagagggagtttctctcttc
cctgagcttcgcataatcagcaccatcactcgggaggtggaaccagagggagatggagat
gaggatcctaccgtccaagaatctttggtatcggaggagatcatgcacaacttggataca
tgtgaggtcacagtgctaggagaggagctaaatcaggagcaggaaagcctggaggttgac
atgacacagttacagcagaagggcattgagatgagcagctccaaccttggcatgatcatc
acaggtgttgatactatggccagctatgaggaggttttgcacttgatacgctacagaaac
tggcacactgtctctctgtttgaccgaaagttcaagttggtctgttctgagcttaatggt
cgctatgtcagcaatgaatttaaagtggaggtgaatgttatccatacagctaatccagtt
gaacatgcaaatcatatagctatgcaaccacagtttgttcatccagtgcatcattcgttt
gttgacctctctggtcacaacctagctaatccccaccccttttcagttgttccaagtact
gctactgttgtcattgtcgtgtgtgtcagtttcctggttttcatgattattctgggtgtg
ttccgaatccgagctgcgcaccagagaacaatgcgtgaccaggatactggaaaggaaaat
gagatggattgggatgactcggccttgaccattactgtgaatcctatggagacctatgaa
gaccagcacagcagtgaggaggaggaagaggaagaagaaagcgaagatggagaggaagaa
gatgatatcactagtgcagagtctgaaagcagtgaggaagaggaaggggagcaggaagag
gaccaacagaatgttaacagacagcaacagctggaatgggatgactctacactcagctat
tga
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