Trachemys scripta elegans (red-eared slider): 117867984
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Entry
117867984 CDS
T07347
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tst03036
]
117867984 (CHD5)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117867984 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
DEAD
PHD_2
AAA_22
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
117867984
NCBI-ProteinID:
XP_034609411
LinkDB
All DBs
Position
19:1974919..2047795
Genome browser
AA seq
1720 aa
AA seq
DB search
MRGPAGAEGEPRDEMENEEELSEEEDGVLEGLEEFYPEEQVTAQKKKKSKKLKENKTSKV
KRRKKEGSNDEISENEEELEDKSESEGSDYSPNKKKKKKLKEKKEKKAKRKKKDEEEDDN
EEGGLKEPKSSAQLMEEWGLDDVDYMFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSK
MMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPQLSASPQQSALPMAIRKAK
TKEGKGPGVRKKIKGSKDGKKKGKGKKMAGLKFRFGGIANKRKKGSSSEEEEREESDFDS
ASINSSSVRSECSAGLGKRGKRRRKKKRIDEGDGYETDHQDYCEVCQQGGEIILCDTCPR
AYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKEEEEEEEEGGEEEEDDHMEFCRVCKD
GGELLCCDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWVWREPPAPF
LSGLRPPDLELSVPPPKPLEGIPEREFFVKWAGLSFWHCSWVKELQLELYHTVMYRNYQR
KNDMDEPPAFDYGSGDEDGKSEKRKNKDPQYVKMEEKYYRYGIKPEWMMIHRILNHSFDK
KGDVHYLIKWKDLPYDQCTWEIDDIDIPYYENLKQIYWNHRELMLGDDIQPPKRLNKKGR
KLKEEKLEKPPETPIVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILA
DEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDK
ESRAVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACL
VVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGF
LEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFIL
TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSG
KLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID
RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM
IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD
VEGMMSQGQRITMPDPMTPFPEAPSSKGGAVTPSMKKKHGSTPPGDNKDVEDSSVIHYDD
AAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDY
WEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDE
DEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRW
GMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQH
VLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSSEVVSSDPNTPVPASPAHMQ
TGPAAQPDKTEIQLGFQEEKEQMEPKPKKPAESQGPASAEKAENEENQESSGNEEKPRDE
KQEESEKAEPSPERLPVRDEAIQEKEKPLEKSELNACQGKGEDKEYKPEDTKVDEKEQSE
TQQNGEKEEEEDGKKEDKNMNFRFMFNIADGGFTGNRVWG
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccggcgggggccgagggggagccgcgggacgagatggagaacgaggaggag
ctgtcagaagaagaggatggagtgctggaagggctggaggaattttatccagaggagcag
gtaactgcgcagaagaaaaagaaatccaaaaagctgaaagaaaacaagacttccaaagtc
aagagaaggaagaaagaggggagcaatgatgaaatatctgaaaacgaagaggaactggag
gacaaatctgagagcgaaggaagtgactattcgcccaacaaaaagaagaagaagaagctc
aaagaaaagaaagagaaaaaagccaagcggaagaagaaagatgaagaggaggatgataac
gaggaaggaggtttaaaggagcccaagagctcagcgcagctaatggaggaatggggcctt
gacgatgtggattatatgttctcagaagaagattaccatactctgactaattacaaggct
ttcagtcagtttctcaggcctctcattgccaagaagaaccccaaaatccccatgtccaag
atgatgacggtgcttggtgccaaatggcgagagttcagtgccaacaacccgttcaaaggc
agctcggccgcggcggcagcagctgcagtggctgcagccgtggaaacagtcaccattgca
ccccagctttctgccagccctcagcagtctgctctgcccatggccatcaggaaagcgaaa
accaaggagggcaaaggtccaggagtgcggaagaaaatcaagggctccaaagatgggaag
aaaaaggggaaggggaaaaagatggcaggcctgaaattccggtttggaggaatcgccaac
aaaaggaaaaaaggctcctcaagtgaagaggaggagcgggaggagtcggactttgacagc
gccagcatcaacagctcttcggtgcgctccgaatgctcggcaggcttgggaaagagaggg
aagaggaggagaaagaaaaagaggattgacgaaggggatggatatgagaccgaccaccag
gattactgcgaagtctgccagcagggaggggagattatcctgtgcgacacttgtcctcgc
gcctatcacctcgtctgcctagatcctgagctggagaaagcgccggagggcaagtggagc
tgccctcactgtgagaaggaagggatccagtgggagccgaaggaagaggaggaggaggag
gaggaaggaggcgaagaggaggaggatgatcacatggagttttgccgtgtgtgtaaggat
ggcggggagctgctgtgctgtgacacctgcccatcttcctaccacctgcattgtctgaac
ccgcctctgccggaaatcccaaacggtgaatggctctgcccgcgctgtacatgccctccc
ttaaaaggcaaagtccaacgtatcctgcactgggtctggagagagcctcctgcccccttc
ctgtctgggctccgtccgcctgacctggagctgtctgtccctccaccaaagcccctggag
gggattccggagcgggagttctttgtgaagtgggcaggactctccttctggcactgctcc
tgggtcaaagagctgcagctggagctctaccacaccgtgatgtaccgcaactaccaaaga
aagaacgacatggacgagcccccggccttcgactacggctccggggacgaggacggcaaa
agcgagaagcggaagaacaaagacccgcagtacgtcaagatggaggagaagtactatcgc
tacggcatcaaacccgagtggatgatgattcaccgaatcctgaatcacagctttgataaa
aagggagatgtccattacctgatcaagtggaaagatttaccctacgaccagtgtacctgg
gagattgatgacatagacatcccctactatgaaaacctgaaacagatttactggaatcac
agggagctgatgctgggggatgatatccaaccgccaaagaggctgaacaagaaagggaga
aaactgaaggaagaaaaactagaaaaacctccagaaactcctattgttgatcctacagtt
aaatttgacaagcagccatggtacattgatgcaacaggtggcaccttacatccttaccag
ctggagggactgaactggctgaggttttcctgggcccagggaaccgatacgatccttgct
gatgagatggggcttgggaagacggtgcagaccatcgtgttcctgtactccctgtacaaa
gagggccactcgaaagggccgtatctggttagtgcccctctctccactattatcaactgg
gagcgagaatttgagatgtgggcacctgacttctatgtggtgacctacacgggggataag
gaaagccgggctgtgatccgagaaaatgagttctcctttgaagacaatgccatccggagc
gggaagaaagttttccgaatgaaaaaagaagcccagattaaattccacgtcctgctcaca
tcctatgagctgatcactattgatcaggctgttttaggctctatagagtgggcgtgtctg
gtggtggatgaagctcacaggctgaagaacaaccagtccaaattctttagggtattaaat
agctacaagattgactacaagctgctgctgaccggaacgcccctccagaacaacttagag
gagctctttcacctgctcaatttcctgaccccggagaggtttaacaacctggaaggattc
ctggaagagtttgctgacatctccaaggaggaccagataaaaaaactccatgatctgttg
ggtccccatatgctccggcgattgaaggcagatgtgttcaagaacatgcctgcgaaaacg
gagctgattgtgagagtggagctcagccagatgcagaagaagtattacaagttcatcttg
acgaggaattttgaagccctgaattccaaaggtggtgggaaccaggtatcgctgctcaat
atcatgatggatttgaagaagtgctgtaatcacccgtacctcttccctgtggctgctgtg
gaggcgccggttttgccaaatggatcctatgacgggaattctttggttaaatcttctggg
aaactgatgctgctgcaaaagatgctgaagaagctgcgagatgggggacacagggtcctg
atcttctcccagatgacgaaaatgctggatttgctggaggatttcctggagtatgagggt
tacaagtacgagcggatcgatggagggatcacgggaggcctgcgccaggaagccatcgac
aggtttaatgctcctggtgctcagcagttctgttttcttctctctacccgagctgggggt
ctgggcataaaccttgcaacggccgacaccgtcattatttatgattctgattggaatccc
cacaatgacatccaggcgttcagcagagctcaccgcatcggacagaacaagaaggtgatg
atctaccgctttgtgacgagagcctccgtggaggagcgcatcacccaagtggccaagagg
aagatgatgctgacccacttggtcgtccgtccagggctgggctccaagtcgggctccatg
accaagcaagagctggacgacattctgaagtttgggacggaggagctcttcaaagacgat
gtggaaggcatgatgtcgcagggccagcggatcaccatgcctgaccctatgacccccttt
cccgaagcaccgtcctccaaagggggcgccgtgactcccagcatgaaaaagaaacatggc
agcaccccgccaggggacaataaggacgtggaggacagcagtgtgatccactatgacgat
gctgccatctccaagcttctggatcggaaccaggacgccacggatgacacggagctgcag
aacatgaacgagtatctcagctcctttaaagtggcccagtatgtggtgcgagaagaggac
ggtgtggaggaggttgagcgagagatcatcaaacaggaggagaacgtggaccccgactac
tgggagaagttgctcaggcaccattatgagcagcagcaggaagatctggccaggaacctt
ggcaaagggaagaggatccgcaaacaggtcaattacaatgatgcctcgcaagaggaccaa
gagtggcaggacgagctctccgataaccagtccgaatactccatcggttccgaggacgaa
gatgaagactttgaagaaagacccgaaggtcagagtggcaggagacagtcacggaggcaa
ctgaagagcgaccgagacaagcctctgccccctctgctggcaagagttggggggaacatt
gaggtgctcggattcaatgcccggcagcgcaaggccttcctaaacgctatcatgcggtgg
ggcatgccgccacaggacgcgttcaactctcactggctggtccgagaccttcgcgggaaa
agcgagaaagagtttagggcttatgtctctctgtttatgagacatttatgtgagcctgga
gccgatggggctgaaacctttgcggacggcgttccccgcgaagggctgtcgcgccagcac
gtgctgacgaggataggagttatgtcactagtaaggaagaaggttcaggagtttgagcat
gtcaatgggaagtacagcacccctgatctgatcccggaggggccggagggcaagaaatcc
agcgaggttgtctcttctgatccaaacacccctgtcccagccagcccagcacatatgcag
actggaccagcggcacagccagacaaaacagaaatacagttggggttccaagaggaaaag
gaacaaatggagccaaagcccaagaagccagcagagagccagggtccagcaagtgcagag
aaagccgagaatgaagaaaaccaagaaagctccggaaacgaggagaaaccgagagacgag
aaacaggaagagagcgaaaaggcggagccttcgcctgagcggctgccggtgagagatgag
gcaattcaggaaaaagaaaagccattggaaaagtcagaattaaatgcctgccaaggtaaa
ggggaagataaagagtacaagccagaggataccaaggtggacgagaaggagcagagtgag
actcagcaaaatggtgaaaaagaggaagaggaggatgggaagaaggaggataaaaatatg
aactttagattcatgttcaacattgctgatggtggctttacaggtaaccgggtttggggc
tga
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integrated database retrieval system
